Alteromonas mediterranea DE1: amad1_02910
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Entry
amad1_02910 CDS
T02340
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
amad1_02910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaa03019
]
amad1_02910
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_02910
Enzymes [BR:
amaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
amad1_02910
Messenger RNA biogenesis [BR:
amaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
amad1_02910
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
amad1_02910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
Cas3-like_C_2
RIH_assoc
Motif
Other DBs
NCBI-ProteinID:
AFV84112
LinkDB
All DBs
Position
complement(637407..638246)
Genome browser
AA seq
279 aa
AA seq
DB search
MTLFHEGIERPNLELKVEQVWGAEEKFAHILRVRKQFTGPGIVYFSLIRSLEEMSERLDS
QRVDHLVYHGKLAPRERKQLQEEFMQGEDHLVLATNAFGMGIDKQNIRFVLHAEIPGSME
SYYQEIGRAGRDGVPSLCLLLYDETDLATQMEFIQWSNPDADFCARVFDYLQRDSEKINA
FGQEWLRDQLHFKHRHDFRLETVLQLFDRYEVIDGSLHPLKIKALHSLPPALIDPEERHQ
KLLRDQKKLHALLEYVKCEDDRKAYIHTYFGLPYHEREP
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
gtgacattatttcacgaagggattgaaagaccgaatcttgaacttaaagtcgaacaggtg
tggggagcggaggagaagttcgcacatattctccgcgtgagaaaacaattcacgggtccc
gggatcgtttatttttcactcatccgcagcctggaagaaatgagcgaaagattggattct
cagcgggttgaccatttggtgtatcacggaaagttggccccacgggagcgaaagcaactc
caagaggaattcatgcagggcgaagatcacctggttttggcgaccaacgcatttggtatg
ggaattgacaagcaaaatattcgtttcgttcttcatgctgaaattcccgggtcgatggaa
tcctactatcaggaaataggccgtgccggacgtgatggggttccttcactatgtttgcta
ctttacgacgaaactgacttggccacgcaaatggaatttattcaatggagtaatcccgac
gctgatttctgtgcgcgtgtgttcgattatctgcagcgcgatagtgaaaaaattaatgcc
tttggacaggaatggcttcgggatcaattgcatttcaagcatcgtcacgactttcgcctc
gagacggttttgcaactgtttgatcgctatgaggtgatcgatggaagtttacatccttta
aagattaaggcgcttcattctcttcccccggcgcttatcgatccggaagaacgacaccag
aaattattgagagaccaaaaaaagctgcacgcacttctcgaatatgtaaagtgtgaagat
gatcgaaaggcgtatattcacacctacttcggactgccttatcacgaaagggagccataa
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