Alteromonas mediterranea DE1: amad1_02985
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Entry
amad1_02985 CDS
T02340
Name
(GenBank) sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
amaa
Alteromonas mediterranea DE1
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amaa03021
]
amad1_02985
Transcription machinery [BR:
amaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
amad1_02985
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AFV84125
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Position
complement(655493..656485)
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AA seq
330 aa
AA seq
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MGKSNKALESKSQDDLEVIDMPADMKADEALTNDAELENDDAIFSQDDQPKNLDATQLYL
GEIGFSPLLTAEEEVYFARRSLKGCEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEE
GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAS
RELSQKLDHEPTAEEIAAALDKPVEDVTKMLRLNERITSVDTPIGGENDKALLDIIADEK
EFSPEESLQDSDIKSNIITWLEELNPKQREVLARRFGLMGYEPSTLEDVGAEIGLTRERV
RQIQVEALRRLRDMLGHQGLSLENLFDQMK
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagtcaaataaagccttagaatcaaaatctcaagatgacttagaagtcatcgac
atgccagctgatatgaaagctgacgaagccttgaccaacgacgctgaactagaaaatgac
gacgccattttcagtcaggacgaccaacctaaaaacctagatgcaacacagctttatcta
ggcgagattggattttcaccactgctaaccgcagaagaagaagtttattttgcgcgccgc
tcactgaaaggctgcgaggcctctcgtaaacgtatgattgtaagtaacctgcgcctagtc
gttaagattgcacgccgttacaataatcgtgggttggcacttcttgatttaattgaagaa
ggtaatttagggcttattcgcgctgtcgaaaagttcgaccctgaacgcgggttccgcttt
tccacatacgccacgtggtggattcgacaaaccatcgaacgcgccatcatgaatcaaacg
cgtactatccgtttgcccattcatgtggttaaagaactcaatgtttatttacgcgcttca
cgtgaactttctcaaaagttagatcatgagcctactgcagaagaaattgcagcggcacta
gacaagcctgtagaagatgtcacaaagatgcttcgactaaacgaacgcattacctctgtt
gatacgcctattggcggagaaaatgacaaagctttgctcgacattattgctgatgaaaaa
gagttcagccctgaagagagccttcaagactcagacatcaaaagtaatattattacctgg
cttgaagaacttaaccctaaacaacgcgaagtactcgcacgccgttttgggcttatggga
tacgagccatcgacgttggaagatgttggtgcagaaattggcctaacacgtgagcgtgtt
cgtcagattcaagtagaagcactacgccgtcttcgcgatatgctgggccatcaggggctt
tcattagagaatctgttcgaccaaatgaagtag
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