Alteromonas mediterranea DE1: amad1_03155
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Entry
amad1_03155 CDS
T02340
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
amad1_03155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaa03019
]
amad1_03155
03009 Ribosome biogenesis [BR:
amaa03009
]
amad1_03155
Enzymes [BR:
amaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
amad1_03155
Messenger RNA biogenesis [BR:
amaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
amad1_03155
Ribosome biogenesis [BR:
amaa03009
]
Prokaryotic type
rRNA helicases
amad1_03155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFV84159
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All DBs
Position
complement(695382..697142)
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AA seq
586 aa
AA seq
DB search
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEAFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQSARERTVEKLKQGQIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQHDSIESLMPIVEMIKEENEASPE
VLMAALLKIAQGDEPLILKETDRPDINSKPPRDSRERNSRDGRERKPKVPRGNRKPEEGM
QRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPDGMPKETRDTLS
GTRVAGQRLNIREWSDTPPKRDGRGSRGDKGDRAPRGNRENRKRKN
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagacctcaatttaccagaaccaatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagctgagagtattcctctt
ttacttgaaggacacgatttactcggtcaggcacagacagggacaggaaaaaccgctgcg
tttgccctgcccatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ttggccccaacccgtgaattagcaattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttcccgtatacggcggccagtcgtacgacaaccaaatt
cgccagcttaagcgcggcgtgcaagtggttgttggtacaccagggcgtatcatcgaccat
atcaagcgcaaaacactagacttaagtgaacttaagtatttagtgctagatgaagcagat
gaaatgcttcgcatgggctttatcgatgacgttgagcttattcttagccacgcgccagaa
gagcgccaaactgcgctgttctcggcaaccatgcctggcccaatcaagaagattacccag
cgctatttgaaagaccctaagcacgtcaaaattgcgtctaaggtaagcactgccagcacc
attcgccagcgctactgtcaaattgcgccgcatcacaaacttgaagcgttaacccgcatc
atggaagtggaagcgtttgacggtatgattattttcgtacgcacgaaaaccgctaccgtg
gaacttgccgataagctatctgcccgtggttacgatgtagaaccgctaaacggtgacatt
cctcaatctgcgcgagagcgtaccgttgagaagcttaagcaaggtcaaattgacatactt
gttgctacagacgttgtagctcgtggtctcgacgtagagcgtgttagccacgtaatcaac
tacgatatcccttacgacagcgagtcttacgtacaccgtattggccgtaccggtcgtgct
ggacgtcaaggtgatgcgattctatttatttcacatcgcgaaaaacgcttgttgttctct
atcgagaagacaactaagcagccaattgaagccatgccaattccttcaattagtgaaatt
aacgaaacgcgtttaagccgctttaagcaatcggttgctgaagcaacgcagcacgatagc
attgaatctttaatgcctattgttgagatgattaaagaagaaaacgaagcatcacctgaa
gtgttaatggcggcattgcttaaaattgcgcaaggcgacgaacctttaattcttaaagaa
accgatcgaccagacattaacagcaagcctccgcgcgacagccgcgaaagaaacagccgt
gatggtcgcgagagaaaaccgaaggtaccacgtggaaaccgcaagccagaagaaggcatg
cagcgcttccgcatcgaagtgggccatgttcacggtgctaaaccgggtaatatcgttggc
gcgattgcgaatgaagcgaatatcaactctaagcacattggtgctatcgagatttatgat
aacttcagtactgttgatttacctgacggtatgccaaaagaaacccgtgataccctttcg
ggcacacgcgtagcaggtcagcgattgaacattcgtgaatggtcagacacgccacctaag
cgcgacggtcgtggaagccgcggtgacaaaggtgatcgtgcacctagaggcaaccgtgaa
aaccgtaaacgtaagaactaa
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