Alteromonas mediterranea DE1: amad1_03720
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Entry
amad1_03720 CDS
T02340
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03410
Base excision repair
amaa03430
Mismatch repair
amaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
amad1_03720
03430 Mismatch repair
amad1_03720
03440 Homologous recombination
amad1_03720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_03720
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
amad1_03720
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
amad1_03720
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
amad1_03720
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
AFV84270
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Position
834529..836250
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AA seq
573 aa
AA seq
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MILPIVRREISGASLSSDLHPVIDRIYRGRNIANIDDLENGLRGLTHFDALKGMPEAAQI
LATAIEQNKRIIIVGDFDADGATSTSVCILALRAMGFDNVDFLVPNRFDFGYGLSVPIVD
EAAKQGADIIVTVDNGISCIDGVTHAKGLGIQVVVTDHHLPGDVLPPADAIVNPNQPGCE
FPSKNLAGVGVAFYIMLALKAKLQQQGHFEKAGIAPPNLASLLDIVAVGTVADVVVLDKN
NRILVHQGLQRIRAGQCRPGIKALVEMANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQG
IACLLEDDTIQARMIAAELDALNKERREIETGMKAQAEMALEQMVLDEGDMPSALVVYRE
DFHQGVIGIVAGRLKEKYLKPVIAFAHQDDLIIKGSARSIPGVHIRDVLDEVNTRYPGVI
EKFGGHAMAAGLSLPVAKLRDFERAFIDIAGKHLAKLDGNHALLSDGDLSASELCLPFAH
LLRQAGPFGQGFESPLFDGEFSLLDQRLVGQKHLKMVLKGDGANEVDAIAFNVDLKAWPN
AMVKRVHIAYRLDINVFRGQETVQLIVEQIEAL
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgattttgcctattgttcgccgcgagataagcggtgcatccttaagttccgacttacac
cccgttattgatagaatttaccgaggtcgtaatattgcgaatatcgatgatttggaaaac
gggcttagagggcttactcactttgacgcgctaaaaggaatgcctgaggccgcgcaaatt
cttgccacagcgatagaacaaaataaacgcattatcattgttggcgattttgatgccgac
ggtgcaactagtacgtcggtttgtattttggcgctacgggcaatgggctttgataacgta
gattttcttgtgcctaaccgattcgactttgggtacgggctcagcgttcctattgttgat
gaagcagccaagcagggcgcagatattattgttaccgtggataacggcatatcgtgtatt
gacggtgttacccatgcaaaagggttaggaatacaagttgtcgttaccgatcaccacttg
ccgggcgatgtgcttccgccagctgatgcgatagtgaatcctaaccaacctgggtgcgag
ttcccttctaaaaatttggcaggggtgggcgttgctttttacatcatgcttgcgttaaaa
gccaagctacagcagcaagggcattttgaaaaagctggcatagctccacctaacttggca
tcactgcttgatatcgttgctgtaggtacggtggccgatgttgtcgtgttggataaaaat
aaccgaatattagtacatcaaggccttcaacgtattcgtgcagggcagtgtaggcctggc
attaaagcgctggtggaaatggcaaatcgggattgtgcccacttaacgtcaacagattta
ggttttgtggtaggcccacgacttaatgccgctggacgcttagatgatatgtctcaaggc
attgcgtgtttattagaagatgacacgattcaagcgcgtatgattgccgccgaacttgat
gcactcaacaaagagcgacgagaaatagaaacgggcatgaaagcgcaggcagaaatggca
ctagagcaaatggtacttgatgaaggcgatatgccaagcgcactggtggtctatcgcgaa
gactttcaccaaggtgttattggtattgttgctgggcgtttaaaagagaaataccttaag
cccgtgattgcctttgcgcaccaagatgaccttattattaaaggttctgctcgctctatt
cccggcgttcatattcgagacgtactcgatgaagttaatacacgataccctggcgttatc
gagaagttcggtggccatgcgatggcggcgggtcttagcctgccggtagctaaactgcgt
gactttgagcgtgcgtttatcgacattgccggtaaacatttagctaaattagatggaaac
catgccctgctttctgatggtgacttatccgccagcgaactgtgcttacccttcgcccat
ttgcttcgccaagcgggcccgttcggacaaggttttgagtcaccgctttttgacggtgaa
ttctcgcttcttgaccagcgcttagttgggcaaaaacaccttaagatggtgttaaaaggc
gacggggctaatgaagtcgatgctatagcgtttaatgtggacttgaaagcgtggcctaat
gccatggttaagcgtgtgcatatagcttatcgccttgatattaacgtattcagaggacaa
gaaacggttcagcttattgttgagcaaatagaagccctgtag
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