Alteromonas mediterranea DE1: amad1_04210
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Entry
amad1_04210 CDS
T02340
Name
(GenBank) exonuclease subunit SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
amaa
Alteromonas mediterranea DE1
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_04210
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
amad1_04210
Archaeal homologous recombinant proteins
amad1_04210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
SbcD_C
Metallophos_2
THEG4
Motif
Other DBs
NCBI-ProteinID:
AFV84368
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Position
941845..943323
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AA seq
492 aa
AA seq
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MKILHTSDWHLGQSFFTKSRKKEHAAFLKWLLQQVEAHHIDAIIVAGDVFDTGTPPSYAR
ELYHAFIGELQGMQCTLVVLGGNHDSVSVLNESKALLKYLNSHVIASTYGEISEQVIALK
NRKGQPSAVLCVVPFIRPRDVLVSESGQNATDKRQALGNAIKQHYASLYSEALTLRNTLE
NNRLEEGIGHSAAIPIIATGHLTALGVSQSESVRDIYIGTLEGFDAKGFPPADYIALGHI
HRPQKVAKTEHIRYSGSPIPLSFDELTSQKQIVLVEFDGVSTTPNISTLPVPRFQAMEVI
KGDLKAIEAMINESEAIAYASLANEDQNASSEPLASHEASSSNEKPFGSKDPVWLCIEVE
TEDYLTDLQQRIQGLLEGKNAEILQLKRMRKRTVKSLSKKQNVQLSELSVNEVFEARLVL
ESLDEEPNETSNEASELPQKNTEPSRIKRIKHLFAEAVALVHTNKEDLENSEGLVQSKPA
SESEPNKETQGD
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatattgcatacatctgactggcatttaggtcagagtttttttacgaaaagtcgc
aaaaaagaacatgccgctttccttaaatggcttctccaacaagtagaagcgcatcatata
gatgcgattattgtcgcgggcgatgtgtttgacactggcacgccgccgagctatgcccga
gagctataccatgcgtttatcggtgaattacaaggcatgcagtgtacgctagtggtgctg
gggggaaatcatgactcggtgtcggtactaaatgaaagcaaggcgctactgaaatattta
aatagtcatgtgatagccagtacatatggagaaataagtgaacaggtcattgcgcttaaa
aaccgcaagggccagcccagtgccgtgctttgtgttgtgccatttattcgccctcgtgat
gtattggtaagtgagtcagggcaaaacgcaactgacaagcgccaagcgctgggcaatgca
ataaaacagcactatgcgtcgctttatagtgaagccctaacactacgcaacacattggaa
aataatcgattagaagagggcattggtcatagcgctgctattcccattatcgccacgggg
catttaaccgccttgggtgtaagtcagtctgaaagtgtgcgtgatatctacattggcacc
cttgaaggctttgacgccaaaggttttccgccagccgactatatcgcattaggccacatc
catagaccccaaaaggtagcgaaaaccgaacacattcgctattcaggctcgcctataccg
ctaagctttgatgaattaacttctcaaaaacaaatcgtgctggtggagtttgacggggta
agcacgacacccaatatctcaacccttccagtacctcgttttcaagccatggaagtaata
aaaggggacttaaaagcgattgaggcgatgattaatgaaagcgaagccatagcctatgct
tccctagcaaacgaagaccaaaacgccagttcagaacctctcgctagccatgaagcttct
agttctaacgaaaaaccttttggctcaaaagaccccgtgtggttgtgtattgaggttgaa
accgaagactacctgactgatttacagcagcgaattcagggcttattagaaggtaaaaac
gctgaaattcttcagctaaaacgcatgcgtaagcgcacggtgaaaagcctgagcaaaaag
caaaatgtacagcttagcgagctgtcagtgaacgaggtttttgaagcgcgcttagtgcta
gagtcgttggatgaggaacctaatgaaacgtccaacgaggcttcagaactgccgcagaaa
aatactgagccgtcacgtattaagcgtattaaacatttgtttgccgaagccgtagcgcta
gtgcataccaataaagaagacttagaaaacagcgaagggctagtacaatcaaagcctgca
agcgaatctgaaccaaacaaagaaacgcagggcgattga
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