Alteromonas mediterranea DE1: amad1_04900
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Entry
amad1_04900 CDS
T02340
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03030
DNA replication
amaa03430
Mismatch repair
amaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
amad1_04900
03430 Mismatch repair
amad1_04900
03440 Homologous recombination
amad1_04900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amaa03032
]
amad1_04900
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_04900
Enzymes [BR:
amaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
amad1_04900
DNA replication proteins [BR:
amaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
amad1_04900
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
amad1_04900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AFV84504
LinkDB
All DBs
Position
1089068..1092532
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSPFIHLRVHSDFSMMDGLNKVKPILGKVAALEMPAVAITDQMNMCGLVKFYSEAHNLG
IKPIIGTDFWVTNEAFGDEPFRLTLLAMNDEGYKNITILISKAYLRGHLAHRAVIDQAWL
AEHAEGVIILSGAQHGDVGVGLMKNNAKLLDSALAFYESYFPDRFYLELIRTGRQGEEDY
LHHAVELAEQHGLPVVATNEVCFIDREGFEAHEIRVCIHDGYTLDDNRRPKRYSEQQYLR
TAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTGGMTTEDFLVKVSEEGLE
ERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEL
YGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFKAEPQL
PEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGNNPVTQF
DKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDISAIPLEDPKSFRTLQNAET
TAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD
AEYQHECLQEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMAKQRG
TFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHYPAEFMAA
VMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVDSEGRIVYGIGAIKGVGEGP
IEAIIEARETQGAFKDLFDFCAKVDIKRVNKRVLEKLVLAGAMDNLGPHRATLMATLPEA
LAAAGQHAKAESFGQSDMFGLLTTEPEEVQQAFADVPEWPEKVWLEGEKDTLGLYLTGHP
INQYADELRYYTDGRLVDLKPTNKDQLASAVGLVLGVRVMTNKRGRRWAIVTLDDKSARM
DVRFFPDMYEQFESLLETDRILLIKGQVSFDDFSGGNTITARDVMDIVQAREKNARALAI
NVDTQRLEPKIMSQMQSILQAFNGGSCPVQLAVTHPDVEVTLACGAKWYVTPEDQLLHDL
KQCLGDKAVSILYH
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgccatttattcatttacgtgttcacagcgacttttcgatgatggacggcctg
aataaggttaagcctattctaggtaaagttgccgcccttgaaatgccagcggtggcgata
accgatcaaatgaatatgtgcggtttggttaagttctattccgaagcacataatctggga
ataaagcccatcattggtaccgacttttgggttaccaatgaagcgtttggtgatgagccg
tttaggcttacgcttttggcgatgaacgatgaaggttataagaatatcaccattcttatt
tctaaagcgtaccttcgcggacatttagcgcaccgggctgttatcgaccaagcatggcta
gccgaacacgcagagggagtaatcatactctctggcgcacaacacggcgacgtgggcgtg
gggttaatgaagaataacgctaagcttttagacagtgccttagcattttatgagtcttac
ttccccgatcgattttacctcgagttaataagaaccggcagacagggtgaagaggactac
ttgcaccatgcggtagagctcgccgaacagcacggtttgcccgtggtcgccaccaacgag
gtgtgcttcattgaccgtgaaggtttcgaggcgcatgaaatacgcgtatgtattcatgat
ggttacacgttggacgataaccgtcggcccaagcgttatagcgaacagcagtacctgcgc
acggcagaagaaatggttgagctatttagcgatattccagaagccattgaaaatacggtt
gaaatagctaaacgctgtaacgtgacggttcgcttaaacgagtatttcttaccacagttt
ccaacaggtggcatgaccactgaagacttcttggttaaagtgtctgaagaagggttggaa
gagcgtctagaatttcttttccccgatgaggaagttcgcaaagctaaacgcccagagtac
gatgaccgacttcgcattgagcttgaagtaattaaccaaatgggtttcccaggctacttc
ctaatcgtaatggagttcattcagtggagtaaggataacggtattccggtagggccagga
cggggctccggtgcaggttcattggtggcgtacgcgcttaaaattaccgacttagatccg
ctagaattcgacttgctattcgaacgtttcttgaacccagagcgtgtatctatgcccgac
ttcgacgtcgacttctgtatggatagacgagatgaagtaattgatcacgttgccgagctc
tacgggcgccaggcggtatctcagatcattaccttcggtactatggcggcaaaagcggta
gtacgtgacgtgggtcgagtattgggtcacccttatggttttgtagacagaatttcaaag
ctcataccgccagaccctggtatgacgctagaaaaagcgtttaaagctgagccacagctg
ccagaagtttatgaaagcgatgaggaagtgaaagaccttatcgatatggcgcgtattctt
gaaggggttacccgaaacgccggtaagcacgccggtggtgttgttatcgcgccaaccacg
attactgatttctctccgctatattgtgatgacgaagggaataacccggtaacccagttc
gataagaacgacgttgaaacggcaggcttggtaaaattcgacttcttaggtcttcgtaca
ctgacgatcattcagtgggcgatagatatgatcaaagagggcaagaacgttgatgtagat
atcagcgctattccgcttgaagatcctaagagtttcagaacccttcaaaacgccgaaacc
actgcagtattccagttggaatcccgcggtatgaaagagctaattaaacgccttaagccg
gactgctttgaagatatcatcgcattggtggctctattccgcccaggaccactgcagtca
ggcatggtagataactttatcgaccgtaagcacggacgtgaagaaatttcttacccagac
gctgaatatcagcacgaatgccttcaagaaatactagaacctacctacggcattatcttg
tatcaggaacaggtaatgcagattgctcaggaaatggcaggttactcactcggcggcgct
gacttacttcgccgtgcaatgggtaagaaaaaacctgaagaaatggcgaagcagcgcggt
accttcgctgaaggtgctaagggcaataatattgaccctgatctggccatgaaaatcttc
gacttggtagaaaaattcgccggttacgggtttaacaaatctcactcggcagcatacgcg
ttggtgtcttaccaaacgctgtggctaaaagtgcattatccggctgaatttatggctgcg
gtaatgtcggcggatatggataacaccgataaaatcgtaacccttgtcgatgaatgtgaa
cgcatgggtattgagatactgccgccagatttaaacgcaggcaaatacaaatttaccgtt
gatagcgaaggtcgcattgtttatggcattggtgcgattaaaggcgtaggcgagggccct
attgaagccattatcgaagcgcgcgagacccaaggggcgtttaaagatctcttcgacttc
tgcgcgaaggttgatattaaacgtgttaacaaacgtgtactcgaaaaattagtgcttgct
ggtgcgatggataatttaggcccccaccgggctacgcttatggcgacgcttcccgaagcg
cttgcagcggcggggcagcatgccaaggccgagtcgtttggtcagtcagacatgtttggc
ctattaaccaccgagcctgaagaagtacagcaggcctttgccgacgtacctgagtggcct
gagaaagtgtggcttgaaggcgagaaagacacacttggcttgtatttaacaggccatcct
atcaatcagtatgctgacgagcttcgctactataccgacggtcgtctggtcgacttaaaa
cctaccaataaagaccagcttgctagtgcagttggcttggtactgggcgttcgcgttatg
acaaacaaacgagggcgccgctgggcaatagtgacactggatgataagagtgccagaatg
gacgtgcgtttctttccagacatgtacgaacagttcgaaagtctgctagaaactgacaga
atattgctcataaagggacaggtcagctttgatgatttctctgggggcaatacaatcacc
gcccgtgatgtaatggacattgttcaggcacgagagaaaaacgcgagagcgctggcgata
aatgttgatacccagcggcttgaaccgaaaataatgagtcagatgcaatctatcctgcag
gcatttaacggtggaagttgtcctgttcagttagcggtgacccatccagacgtagaagta
accttagcgtgtggagcaaagtggtacgttacccctgaagatcaacttttacacgatctc
aagcaatgtttgggagacaaagccgtttcaattctctaccattag
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