Alteromonas mediterranea DE1: amad1_09290
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Entry
amad1_09290 CDS
T02340
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
amaa
Alteromonas mediterranea DE1
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amaa03016
]
amad1_09290
Enzymes [BR:
amaa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
amad1_09290
Transfer RNA biogenesis [BR:
amaa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
amad1_09290
Prokaryotic type
amad1_09290
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AFV85367
LinkDB
All DBs
Position
2079762..2080733
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AA seq
323 aa
AA seq
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MARRRKGRDINGIVLLDKPLGGSSNQLLQKVRWLYKAAKAGHTGALDPLASGMLPLCLGE
ATKFSQFLLDAEKTYEVTAQLGVRTTTSDADGEVVEEKPVNVSEEQVRDACLAFLGKSKQ
IPSMFSALKHQGKPLYYYARQGIEIEREPRDIEVFELDVLRIELPYVDMRIKCSKGTYIR
SIVDDLGQNLGCGAYVTRLHRTEVADYPTDKMVSLEKLIEIQESLDDGEFKALDDLLIPM
DTAVSRLPFVTINDAERNRFDNGQSVKGECSEPLSEGTSYRVYHGVDINGIFLGVGEGVL
DPKDQGIPKQEIFVNPKRRVVYS
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacgtcgtaaaggccgtgatattaacggcatagtattgcttgataaaccactt
ggtggttcttcgaatcagcttcttcaaaaagtgcgttggctttataaagcagccaaggcg
ggtcacacaggagcgcttgatcctctcgctagtggtatgctgcctttgtgtcttggtgag
gcgactaagttttctcagtttctgctcgatgctgagaaaacgtatgaagttacggcgcag
ctaggggtgcgtacaaccacctctgacgcagacggcgaagttgttgaagaaaagcccgtc
aatgttagcgaagagcaagtccgcgacgcatgccttgcttttttaggtaaaagcaaacaa
atcccgtctatgttttctgcactcaaacatcaaggtaagccgctgtattattatgcccga
caggggattgaaatagagcgagagccccgtgatattgaagtctttgagcttgacgtgtta
cgcattgagcttccttacgtggatatgcgaataaaatgcagcaaaggcacgtatatacgt
tcaatcgttgatgacttagggcaaaacttaggatgcggtgcctacgttacccgtttacat
cgtactgaagtggccgattatcctacggataaaatggtatcgcttgaaaagctaattgaa
atccaggagtcactagacgacggtgagtttaaagcacttgatgacttgctcattcctatg
gacaccgcggtaagtcgtctgccgtttgtgactatcaacgacgctgagagaaatcgcttt
gataatggacaatcggttaaaggagagtgcagcgagccacttagtgagggcacgtcttat
cgtgtttatcacggtgttgatatcaacggcattttccttggcgtaggggaaggggtactt
gacccaaaagatcagggtatacccaagcaagaaatattcgttaacccgaaacgtcgcgtt
gtttatagttag
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