Alteromonas mediterranea DE1: amad1_11925
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Entry
amad1_11925 CDS
T02340
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
amad1_11925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_11925
Enzymes [BR:
amaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
amad1_11925
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
amad1_11925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AFV85890
LinkDB
All DBs
Position
complement(2670453..2674073)
Genome browser
AA seq
1206 aa
AA seq
DB search
MLALYPSNKLEHLSFLLTTLLRQQPLGVFTPETILVESPGMQHWVSMQMANEHGVAMNID
YPLPVRFMWNTARTVLGADKVPKQSPYRREVLTWRIDNVLQDNALMDSDAFEQVNKYWQS
AGSEQEQGLQRLQLATALADVYEQYLLYRPDWLFKWENNERAVFDDMEVWQSEIWRILAK
DQPLHPARLHQMTLEALEAGNVPAHLPKRVIVFAINTMAPQLIAFFDALAQHIDIHIFHL
NPSVNYWGEAKSSSEQAKLLRLEGLKKWMEEDQSNPLLGNLGKQGRELFNLLTELDTFEI
SAFDSPDFESAGKGEDEHGQCHSRGLLDYIHNDILQAAHPQPLIHQSKNKDDSVTVMCTH
SALREVQVLHDHLLHWLSQDKTRTPSDILVMCPAIENYAPFVDAVFHRVGTKSLGATGQV
RLPCTIADRSPMDAEPLIAAFMALLQLPDSRFGVSDILDYLQLDSVQKRFSVSQDDIEQM
VVWLKQAHIHWGLNSAHKTAVSEGVNLDDTYSWWWGIRRLLMGMLAPDSEMIVSDVLTIP
DVEGQSALTLGKLIEVVALLGEFAQELTQPRTPEQWSKALIALRDACFMPTKDQQQSWDL
IAKVAADLAARCEEANYEHELTLRQVRDLLLNRFSSPDAGNHFMTGQVTVCSMLPMRSIP
FKKVCILGLNDSEFPRKSSPLGLDLMASDGRRVGDRSRRLEDRYLFLEAIISTRESLYLS
YQGNDVTNNSERQPSLVLAEFMDMLENNYALSLEKYAVHAPLHPFSEPVFAGALPSYETG
WLRLADALQHNKFGANAADTNENADVVDTSLDTATADISQSPRALATQALRLSNMQIARA
FKDPLEHFSIQRLGVNLSQSFTLLENSEPFETNALLRYQVLDAIFSSPERNNSSELDASE
LTYSEQVITFASLRGDIPNNPVAMDEVEMWKEGALALSQAMGPHDAEPKKAQFQGKYITF
TTSALEGSDALVELCAGKVDAHRALGFFISQLIFSSSDETTSYTHYPLEIYACSWEKGET
ILKKQKFAAVERETAVQLLLFIEQLYMAIYTAPTPVHLSLFGSIIPGKRNSECKPVVDSI
KPEMFGHLLRALLSADNSCETDKAVIYQVKQAIDEVCPIADNDTVDEASEKAQQIITQAA
GLFDTVELQRSLTDWQQSSGQYSADMANNPYLNWLFPQGINWSDVPHLSAFLLLAMVNNA
SQEEKL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgcgctatatccctctaacaaattagaacacttaagttttcttcttactacgctt
ttacgtcaacaacctttaggcgtatttaccccagaaacgatcttggttgaaagcccaggt
atgcagcattgggtaagcatgcagatggctaacgaacacggcgtagctatgaacatcgac
tacccactgcccgtgcgttttatgtggaatacagcacgcactgtattgggggctgacaag
gtaccgaaacaatcgccttatcgccgcgaagtactcacgtggcgtatagataatgttctt
caagataatgcgctaatggatagcgatgcattcgagcaggttaacaaatactggcaaagt
gcaggtagtgaacaagagcaggggcttcagcggcttcagcttgctacggcactggctgac
gtatacgaacaatacttgctgtatcgccctgactggttgtttaaatgggaaaataacgag
cgagccgtattcgacgatatggaagtgtggcaaagtgaaatttggcgaattttagcgaaa
gaccagcctttgcatcccgcacgcttacaccaaatgacgctggaagcgctagaagcgggt
aacgtacctgctcatttgcccaagcgcgttattgtttttgccataaacaccatggcgccc
caactcattgcgtttttcgatgcccttgcccagcacatcgatatacatatctttcacctc
aaccccagtgttaactattggggtgaagcaaaaagtagtagtgagcaagccaagctgctt
cgtttagaaggacttaaaaagtggatggaagaagaccaatccaacccactgcttggcaac
ttaggaaagcagggccgagaactgtttaacttactcaccgagctggatacgtttgaaata
agtgcattcgactcgccagatttcgaaagtgcaggtaagggagaggatgaacacggacag
tgtcattccagaggcctgctcgactacattcacaatgatatccttcaggctgctcacccc
cagccactgattcaccaatcaaagaacaaagacgacagtgtcaccgtaatgtgcacccat
tctgcactgcgcgaagtgcaagtgttacatgaccacttgctgcactggttgtctcaagac
aaaacccgcacaccctctgacatattggtgatgtgcccggcgattgagaattacgcgccg
tttgttgatgcagtatttcaccgtgtgggtaccaaatctttaggcgctactgggcaggta
cgtcttccttgtactattgctgacagaagccccatggatgcagagccccttattgcagca
ttcatggccttgctacagttaccggatagccgctttggtgtatcggatattttggattac
ttacagctcgactcggttcaaaagcgcttttccgtgtctcaagatgatatagagcaaatg
gtcgtttggttaaagcaggcacacattcattggggccttaatagcgctcataaaactgcg
gtgtcagaaggcgtaaatctagacgacacctatagctggtggtggggcattcgccgttta
cttatgggcatgcttgcgccagatagcgaaatgatagtgagtgatgtacttaccattccc
gatgtggaagggcaaagcgcgttaacgttaggtaagctcatagaagtggtggcgttactg
ggggaatttgctcaagagttaacccaaccccgaacgccagaacagtggtctaaagcattg
attgcgcttcgtgacgcctgctttatgcctacaaaagatcagcagcaaagctgggatctc
atcgccaaagtcgccgcagaccttgccgcccggtgtgaagaagctaactatgagcacgaa
ttaaccttgcgacaggttcgagatcttttgctcaatcgattttcatctccagatgccgga
aaccactttatgaccggtcaggttacggtatgttctatgcttccaatgcgaagcataccg
tttaaaaaagtgtgtattttaggcctgaatgacagtgagtttcctcgtaaatcaagcccg
ttagggctcgatttaatggcaagtgatggtcgcagggttggcgatcgctctagacgattg
gaagacaggtacttattcctagaagctattatctcaacccgggaaagcctgtatttaagc
tatcaaggtaacgatgtaacgaataacagcgaacgacagcccagtctcgttttggctgag
ttcatggatatgcttgaaaataactatgcattgtcactagagaaatacgcggttcatgcg
ccgttacatcccttcagtgaaccggtttttgctggggcgttgcccagttatgaaacgggg
tggcttcgcctagccgatgcgcttcagcacaacaaatttggtgctaacgcggctgatacg
aatgaaaacgctgatgttgttgatacctccctcgatacggcgacagctgatattagccag
tcgccccgcgcacttgcaacacaagcgctacgtttgtcgaatatgcaaatcgccagagca
tttaaagatccgcttgagcatttttccatacaaaggcttggcgtgaatttatcgcaatca
tttaccctgcttgagaacagcgaacctttcgaaaccaatgcattgctgcgttatcaggtg
ctcgacgctatattttcctcgcctgagcgcaataattcgtcagaacttgatgccagtgaa
cttacatacagcgagcaagtaattacatttgcttcgcttagaggggatattcccaataac
ccagtggcaatggatgaagttgaaatgtggaaagagggagcgctagcgctaagtcaagct
atgggccctcacgatgccgagcccaaaaaggcacagtttcaaggtaagtatattaccttc
acgacttcggccctagaaggcagcgacgcattagtcgagctttgcgccgggaaagttgac
gctcatcgggcgctaggctttttcatctctcaattgatattttcaagtagcgatgaaaca
actagttacacccattacccattagaaatttacgcctgctcttgggaaaaaggcgaaact
attctgaaaaaacagaaatttgctgcagttgagcgcgagaccgccgttcagttactcctg
tttatagagcagctttacatggctatttacaccgcgccaacccccgtgcatttaagtttg
tttggtagcattatacctggtaagagaaattcagaatgtaaaccagttgtcgacagtata
aaacctgaaatgtttggacacctacttagggcgctattgagtgctgacaattcctgtgaa
accgacaaagcggttatttatcaagtaaagcaggctattgatgaagtctgccccattgca
gataacgacactgtcgatgaagcaagcgaaaaagcacagcaaatcataactcaagcggct
gggcttttcgacacggtagaattacaacggtcgctaaccgattggcagcaaagtagcggg
cagtatagcgctgacatggctaataacccttatcttaactggctatttcctcaaggtatc
aattggagtgatgtgccgcatttaagtgcctttttactactcgccatggtaaacaacgcg
tctcaagaggagaagttatga
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integrated database retrieval system
