Alteromonas mediterranea DE1: amad1_12660
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Entry
amad1_12660 CDS
T02340
Symbol
truA
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
amaa
Alteromonas mediterranea DE1
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amaa03016
]
amad1_12660 (truA)
Enzymes [BR:
amaa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
amad1_12660 (truA)
Transfer RNA biogenesis [BR:
amaa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
amad1_12660 (truA)
Prokaryotic type
amad1_12660 (truA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Terpene_synth_C
Motif
Other DBs
NCBI-ProteinID:
AFV86032
LinkDB
All DBs
Position
complement(2841029..2841820)
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AA seq
263 aa
AA seq
DB search
MGRIALGIEYDGAAVYGWQRQREVPSVQEHLEKALSTVANEPIEVQCAGRTDAGVHATGQ
VVHFNCDAPRSERAWTLGVNANLPNSVAVTWAKNVADDFHARFSATHRRYRYVIHNAKMR
PAILSSGVTHIHRELDEKKMHLAAQALLGEQDFTSFRAALCQSKTPFRNVTNVSVYRQGR
YVIIDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAKPNGLYLV
DVTYPEEHGLPKPPLGPLFLPEA
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggggcgaattgccttagggattgaatacgatggggctgctgtttacggttggcaacgc
cagcgggaggtacccagtgttcaagagcatcttgagaaagcattatcaacggtggccaat
gagcctattgaggtgcaatgcgctggacgcactgatgcaggtgttcacgccactggccaa
gttgttcactttaattgtgacgcaccacggtcagagcgtgcatggacgttaggtgtaaat
gctaatttaccaaactctgttgccgttacatgggcaaaaaatgtggctgatgatttccac
gcacgtttttcagctacccatcgccgctatcgctatgttatccacaacgccaaaatgcgc
cccgccatactcagttcgggcgttacccacattcatcgcgaattagacgaaaaaaaaatg
caccttgctgctcaagcactattgggtgagcaggattttacgtcgtttcgcgccgcgcta
tgccaaagtaaaacgccgtttcgcaacgttaccaatgtaagcgtgtaccgccaaggtcgc
tatgtgattatagatatccgtgccaatgctttcctgcatcacatggttcgcaatatcact
ggcgcgcttgttgaaattggggcaggggagcaagatgtaaactggattgctcacctgtta
agtttaaaagatagaagcaaatctgcagctacggccaagccaaatggtttgtatttagtc
gatgtaacctacccagaagagcacggcttgcctaagccgccactagggccgctgttcctt
ccagaggcctaa
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