Alteromonas mediterranea DE1: amad1_15425
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Entry
amad1_15425 CDS
T02340
Name
(GenBank) putative excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
amad1_15425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_15425
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
amad1_15425
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
amad1_15425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
AAA_29
nSTAND1
AAA_16
DnaJ_CXXCXGXG
AAA_15
AAA_25
DUF4350
APS_kinase
Viral_helicase1
SLFN-g3_helicase
MeaB
APOBEC2
SNAD4
Motif
Other DBs
NCBI-ProteinID:
AFV86579
LinkDB
All DBs
Position
complement(3471482..3473986)
Genome browser
AA seq
834 aa
AA seq
DB search
MHKDEGRIQIRGARVHNLKNINVDIPRDCVVVFTGVSGSGKSSLAFGTLYAEAQHRYLDS
ISPYARRLIEQVEKPEVDALEGLPPAVGLHQRRQAPSVRSSIGSITTLSNSLRMLYSRAG
DYPEGQAIIYADGFSPNTPEGACERCDGIGKVFDTQAQLLVPDDTLTIREGAVAAWPGAW
QGKNLVRVLLSLDIDVDVPWRELPKATRDWILYTDEAPQMPVYRNYNLEQTRKALAEGEP
ASYKGKFISARRHVLDTFKTSQKEKVKQRISRFLSVTPCPRCHGKKLKKKALNVTVEGVD
IIDFSRLPLRDVNEKMNKLRGSVAGDTSERAQVIRNIADDVIDRIKPIIALGLHYLSLDR
STTTISVGELQRLRLATQLKSNLFGVVYVMDEPSAGLHPRDVESLVNALHDITKAGNSLL
VVEHNPYVIKGAKWVVDIGPSAGKEGGELIFSGPVDELAKVETSPTAEFVFNDKPLVSRE
KCNSSLTLSLKNVSRNNVNNIDIDIPLGVMTTVTGVSGSGKSSLISQALVELVKEGLGSV
KDKTDGEVNEVALLSAEDKVTQEGFIASGSDNISRLVVVDQSPIGRTPRSTLATYTGMFD
QIRRLFATTDDAKSREYDAGHFSFNVTKGRCPNCEGLGVVSVELLFMPSVYSPCSVCNGS
RFKDEVLDVHYKKHSIADILSLTVNEAQDVFEDNSAVLRGLKTLINVGLGYLTLGQSATE
LSGGEAQRIKLASELKRAQNNNTLYVLDEPTTGLHLSDTALLLEHLSTLVDSGNTVVMVE
HNMQVAAASDHVIDMGPGAGEDGGQIVAWGTPKDVAKNKESATAPFLKQACKIN
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
gtgcataaggatgaagggcgaattcagatacgtggtgctcgcgtacataacttaaagaat
atcaacgttgatatacctcgagattgcgttgtcgtttttaccggcgtatctggctcaggc
aagtcctcgttggcgtttggtacgctgtacgccgaagcgcagcatcgttatttagattcc
atatcgccctacgcccggcgtctaatagaacaagtcgaaaagccagaagttgatgccttg
gagggattaccgccagccgttggcttacatcagcgtcgccaagcgccgtcagtgcgttca
tctataggcagtataactaccctttctaacagcctgcgaatgctttattcccgagcaggg
gattacccagaaggccaagctattatttatgcagacggcttttcacccaacacacctgaa
ggcgcatgcgagcggtgcgacggtatcggtaaagtgtttgatactcaagctcagctttta
gtgcctgacgataccctaaccattcgagaaggggctgtggcggcttggcccggtgcgtgg
caaggtaaaaatcttgtgcgggtgctgctgtctcttgatattgacgtggatgtgccgtgg
cgtgaattgccgaaagcgacgcgcgattggatcttatatacagacgaggcgccacaaatg
cctgtctatcgaaattacaacctagaacaaacgcgcaaagcgctagcagagggcgaacct
gctagctataaagggaagtttataagcgccaggcgtcacgttttagatacctttaaaacc
tcacaaaaagaaaaagttaagcagcgtatttcccgtttcctctccgttacaccgtgcccc
cgttgtcatggtaaaaagcttaagaaaaaagcccttaacgttacggtagagggtgtcgat
attattgacttttcaaggctaccgctgcgcgacgttaatgaaaaaatgaataagctgcgg
ggttcagtagcaggtgatacttcagaaagggcacaagtcataagaaacatagcggacgat
gtcatcgatagaattaaacctattatcgcgctaggtctgcattacctttcactagataga
agcactactactatttcggttggcgagttacagcgactgcgcctcgctactcagctaaaa
tctaatttatttggcgtggtttatgttatggatgaaccttcggctgggttgcaccctcgc
gatgtcgagtccttagttaatgcgcttcatgatattactaaagcgggtaattctctgttg
gttgttgagcataacccctatgtgattaaaggggctaagtgggtagtagatattggccct
agtgccggtaaagagggtggtgagctgatattcagtgggccagttgatgaactcgcgaag
gtagagacttcgccaaccgcagaatttgttttcaatgacaaacccctcgtatcaagagaa
aaatgcaactcatcattgacgctaagtcttaaaaacgtgagcagaaacaatgtaaacaac
attgatattgatattccccttggcgttatgacaacggttactggcgtttcaggctctgga
aagtcgagtcttattagccaagcattggtggagctagtaaaagagggattgggtagcgtt
aaagataaaactgacggtgaagttaatgaggtcgcgttactttcagccgaagataaggtt
acccaagagggctttatcgccagcgggtcagataatataagtcgcttagtggttgtagat
cagtctcctataggcagaacaccacgctcgacgctcgcaacctacacgggcatgttcgac
caaatcagacgcttatttgctaccactgacgacgcgaagagccgtgagtatgatgccggt
catttttcttttaacgtgaccaaaggccgatgccccaactgtgaaggactaggtgtagtg
tcggtagaattactatttatgcccagtgtgtattcaccgtgttcggtctgtaatggttca
cggtttaaggatgaggttttagatgttcactataaaaaacactctattgccgatatttta
tctcttacagtcaacgaggcgcaggatgtatttgaggataacagcgcagttttgcgaggg
cttaaaacactaattaacgttggccttggttatcttacactggggcaaagtgccaccgag
ctatcaggaggtgaggcccagcgtattaagttggcctctgaacttaagcgtgcgcaaaac
aataacaccctttatgtgctggacgaaccgaccacaggtttgcacctttcagatactgca
ctgcttttggagcacttaagtacgcttgtggatagcggtaacaccgtggtgatggttgag
cataatatgcaagtggccgccgctagtgaccacgttattgatatggggccgggagctggc
gaggacggtggacaaatcgtggcgtggggcacaccaaaagacgttgcgaagaataaggaa
agcgcaactgcgccctttttgaagcaagcttgcaaaataaattaa
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