Alteromonas mediterranea DE1: amad1_18530
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Entry
amad1_18530 CDS
T02340
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
amad1_18530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amaa03021
]
amad1_18530
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_18530
Enzymes [BR:
amaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
amad1_18530
Transcription machinery [BR:
amaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
amad1_18530
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
amad1_18530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AFV87183
LinkDB
All DBs
Position
complement(4199423..4203595)
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEEYLDALEEHGDEFDAKM
GAEAVFDLLTVLDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEGMVFTSPNEAEKAYRTG
NAELHSRVKVRITEYDIDEDGNKTEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKEIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQQSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVQMTPLIEGGDVVEPLRERVL
GRVVAEDVIKPGTDEVLVERNVLLDEALVDMLEANSVDQIQVRSVITCDNDFGVCAKCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNAKFVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDVVANW
DPHSHPIITERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLAKVNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEISGTIGFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFEGEKVEKGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCVITSPGDTQFL
EGEQVEVSNVKVANREIEKLGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEQIEEMSVSAADAEQALTEAL
NAGADEDNAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagaccgaagaattcgataatatt
cgaatcggtctgtcttcacctgacatgattcgttcatggtcattcggtgaagttaaaaag
cctgaaacaattaactaccgtacgttcaagcctgagcgtgacggtctgttctgtgcgcgt
atctttggtccggttaaagactacgagtgtctttgcggtaagtacaagcgccttaagcac
cgcggtgttatctgtgagaagtgtggcgttgaagttacactgactaaagtacgtcgtgag
cgtatgggtcacatcgagctagctagcccggttgcacacatctggttccttaaatcactt
ccgtctcgtatcggccttatgcttgatatgacacttcgtgatattgaacgtgtactttac
tttgaatcatacgtggttacagagccaggtatgacgacacttgagcgcagccaacttctt
aacgaagaagaatacttggatgcacttgaagagcacggtgatgagtttgatgcgaagatg
ggtgctgaagcagtattcgatcttctaacagtacttgacgtagacgcagacgttgcggct
atgcgtgaagagctaccttcaataaactctgaaactaagcgtaagaaaattactaagcgt
cttaagttgcttgagtcattccagcagtctggcaacaagccagagtggatgattatgacg
gtacttccggtacttccaccggaccttcgtcctctagttccactagatggcggccgtttt
gcaacgtctgaccttaacgacctataccgtcgtgtaatcaaccgtaacaaccgtcttaag
cgtcttctagacctagctgctccagacattatcgtacgcaacgaaaagcgtatgctacaa
gagtctgttgatgcgcttctagataacggacgtcgcggtcgtgcgattaccggttctaac
aagcgtccacttaagtcgcttgcagacatgatcaagggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactattctggccgttctgtaattaccgttggtcctacg
ctacgtcttcaccagtgtggtcttcctaagaagatggcacttgagctatttaagccgttt
atctacggtaagctagaaggtcgtggtcttgcgacaacaattaaagcagctaagaagctt
gtagagcgcgaagcaccagaggtttgggacgtactagatgacgttatccgcgaacacccg
gtactacttaaccgtgcacctacacttcaccgtttgggtatccaagcattcgaacctaca
ctaatcgaaggtaaagcgattcagcttcacccgctagtgtgtgcggcgtataacgccgac
ttcgatggtgaccaaatggcggtacacgtaccgttgacaatcgaagcacagctagaagca
cgtgcacttatgatgtcaacgaacaacatcctgtcgccagcgaacggtgagccaatcatc
gtaccttcacaggacgttgtattaggtctttattacctgacgcgtgacaaagtaaacggc
ttaggcgaaggcatggtatttaccagcccgaatgaagcagaaaaagcataccgtacaggt
aatgcggagcttcactcacgcgttaaagtacgtattactgagtacgacatcgatgaagat
ggcaacaaaactgagaaagtaacgcttactgacactactgttggtcgtgcaattttctca
ttgatccttccaaagggtctaccgtttgaaatcatcaaccaagccatgggtaaaaagcag
atttcaagactattgaatgcttgctaccgtacgctaggcttgaaagatacagtaattgct
gctgaccaaatcatgtataccggtttccactacgcgatgatcgcgggtgcgtcagttggt
atcgacgatatggtaatccctgctgctaagaaagaaatcatcgacgcggcagaagcagaa
gttatcgaaattcaggaacagttccaaaacggtcttgttaccgcgggtgagcgttacaac
aaagttatcgatatctggtcaaatgccaacgaaaaagttgctaaggccatgatggataac
cttaagactgacatcgtaattaaccgcgatggcgaagaagaagagcagcaatcatttaac
tctgtttacatgatggccgactcgggtgctcgtggtagtgccgctcagattcgtcagcta
gcaggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattaca
gcgaacttccgtgaaggtctgaacgtactacagtacttcatctctactcacggtgcgcgt
aaaggtctagcggataccgcacttaagacagctaactcgggttacctaacacgtcgtcta
gtagacgttgcacaggacttggtaatcactaacgacgactgtggcacattcgaaggtgtt
caaatgacaccactaatcgaaggtggtgacgttgttgaaccacttcgcgagcgtgtacta
ggtcgtgtagttgctgaagatgttattaagcctggtactgatgaagtattggtagaacgt
aatgtactactagacgaagcgctagtagacatgcttgaagccaactctgttgaccaaatc
caagtacgctctgttatcacgtgtgacaacgacttcggtgtttgtgctaagtgttacggt
cgtgaccttgcacgcggtcacatggtcggtagcggtgaatcggttggtgttattgcagca
caatcaatcggtgagcctggtacacagcttaccatgcgtacgttccacatcggtggtgcg
gcatcaagagcatcagcagaaaacagcgtacaagttaaaactgcgggtagccttaagcta
cacaacgcgaaattcgtacgtaattctgacggcaaagtggttatcgtttctcgctcaaca
gaacttactgttatcgatgagcaaggccgcgagaaagagcgctataaagtaccttacggt
gcagtacttagcgtggatgacggtgcaactattgcagctggcgacgttgttgctaactgg
gatccgcatagtcacccaatcatcactgaacgtgcagctaagattagcttcgcagacatt
gatgactctaacacagagatgcagcaggacgagcttactggtctaacccgtatcgttgtt
aaagaccttgctaaagttaactctaaagagcctaagctaattcttgaaagcgacgagttc
ggtcttcaagaaattcgtcttccaagcttcacaacgattgaagcgaaagaaggcaaagta
gctaacgaaggtgacgtgcttgcacgtattcctcaggaaagctcgaagactcgtgatatc
accggtggtctaccgcgcgttgcggacttatttgaagcacgtaagcctaaagagcctgca
attcttgcagaaatctcaggtactatcggcttcggtaaagagaccaaaggtaagaagcgt
cttgtaattacaccagctgaaggtgatgcatacgaagagatgattcctaagtggcgtcag
cttaacgtgttcgaaggtgagaaagtggaaaaaggcgaagttatcgccgacggtccagag
tctccacacgatatcctgcgtctacgtggtatctcagcagtagcaaactacatcgtgaac
gaagttcaggaagtataccgtctacagggtgttaagattaacgataaacacatcgaagta
gttatccgtcagatgctacgtaagtgtgttatcactagtcctggcgatacgcagttcctt
gaaggcgaacaggttgaagtatcgaacgttaaagtggcgaaccgtgaaattgaaaaactc
ggtaagattccagcgcagtacgaaacacagctgcttggtatcactaaagcgtcactgtct
actgagtcatttatctcagcagcatcgttccaagaaacaacccgtgtgctaactgaagct
gcggttcaaggtaaagaagatgacctacgcggtctgaaagaaaacgtaatcgttggtcga
ctcattccagcgggtaccggtttcgcttaccatgaacgccgcgctcaacgtcgcaaagag
caaatcgaagaaatgtcggtatctgccgctgatgcagaacaggcactgaccgaagcgctt
aatgccggtgcagacgaagataacgccgagtaa
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