Alteromonas mediterranea DE1: amad1_18605
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Entry
amad1_18605 CDS
T02340
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
amaa
Alteromonas mediterranea DE1
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amaa03009
]
amad1_18605
Enzymes [BR:
amaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
amad1_18605
Ribosome biogenesis [BR:
amaa03009
]
Prokaryotic type
rRNA helicases
amad1_18605
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
MMR_HSR1_Xtn
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFV87198
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All DBs
Position
complement(4218665..4220044)
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AA seq
459 aa
AA seq
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MTVETLKQLDINPAITKALDSQGIHQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVI
PALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSL
KHSPHIIVGTPGRVMDHVEKRRIDLRNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQ
TLLFSATFTEQIERVAKQYLHNPVTCKVESQENKPAITQLGYNVLPHTRTQALKAVLTEY
QPKNAIVFCNRKTQVNDVVDELIEDGFSAKGLQGDMEQHQRTSVLMQFASDSLQVLVATD
VAARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAKGMAITLVSEEEEHFLRKIEVL
QESDIPLKGAQSLRFHKNKITQPEFTCISLSAGKKEKLRPGDLVGALTKDAGIPGDDLGK
IKVQNSMSFVAVKTRSVKKAMTQFREGKIKGKRIRARKL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgaaacactaaagcaattagatataaatcccgccatcacaaaggcattggac
tcacaaggcattcaccagctttctcctattcaagcccaatcgcttcccgaagctttacag
ggcaaagatgtgattggtcaagcgcaaaccgggagtggtaaaacgctttgtttcgtgatc
cccgcgcttgaaaaaattgaagttaatgacttctcaactcaggcgataatgttgtgccca
actcgtgagcttgcagaacaagtcgcgcagcagtgtcgctctgcggcgaaagatataggt
aacatcaaggtgacaaccttgtgtggtggtcagccgatggggccgcagattcagtctctc
aaacatagtcctcatattattgtaggtacgccgggtcgcgtaatggatcacgttgaaaaa
cgccgtatagatttgcgtaatgtaaaactgcgtgtgttagatgaagccgatcgcatgtta
gatatgggctttgaggatgacctacgcattatctttggtcaaacgccaaagcaggtgcaa
accctgctgttttctgccactttcactgaacaaatagagcgtgtggctaagcaatatctg
cacaatccggtaacctgcaaagttgagtctcaagagaataagcctgccatcactcagctg
ggatacaacgtactgcctcatacccgcacgcaggcactaaaagcggtgttaacggaatat
cagcctaaaaatgccattgttttctgtaatcgtaaaacgcaggtaaatgacgtagttgat
gaactgatagaagacggttttagcgctaaagggcttcagggagatatggagcagcaccaa
agaacctcagtgttaatgcagtttgccagcgactcactgcaagtgctagttgccaccgat
gtagccgctcgcggactagatatcgacgatgttgcctgtgttatcaattacactgtaagc
gaagagcccgaaacccatattcaccgtataggacgtacagcgcgagctggggcgaaaggc
atggccataacgctggtaagtgaggaagaggagcatttcctaagaaaaatagaagtgcta
caggaaagtgatattccgctaaaaggggcgcaaagcctacgctttcacaaaaacaaaatt
acccagcccgagtttacttgtatttcattgagtgccggtaaaaaagaaaagcttcgtcct
ggtgacttagtcggagcgttgaccaaagatgcgggtattcccggcgatgacctaggtaaa
attaaagttcagaacagcatgagttttgtagcggtgaaaacgcgaagcgtgaaaaaagcc
atgacgcagttcagagagggcaaaattaaaggaaagcgtattagagcaagaaagctttaa
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