KEGG   Alteromonas mediterranea DE1: amad1_18680
Entry
amad1_18680       CDS       T02340                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
amaa  Alteromonas mediterranea DE1
Brite
KEGG Orthology (KO) [BR:amaa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amaa03400]
    amad1_18680
Enzymes [BR:amaa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     amad1_18680
    5.6.2.6  RNA 3'-5' helicase
     amad1_18680
DNA repair and recombination proteins [BR:amaa03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    amad1_18680
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: AFV87213
LinkDB
Position
complement(4234707..4237313)
AA seq 868 aa
MTSLPAAFSKWFKQKGWQLRDYQQTMLTEKDQHDCTLLIAPTGAGKTLSGFLPSLIELAE
TYGMSELAETVEDGAPIEVAETRQLSGSRETDEHVETKATDRQAKKGKEKGGFNGLHTLY
ISPLKALTQDIHRNLLQPIEEMALPITAETRTGDTPSHKRQRQRKKPPNILLTTPESLML
MLSYADADKLFGKLKRVIIDETHSLMANKRGDLLSLALARLSVFSPHCKRIGLSATVAFP
ETLGAWLAGSDSVANIIKVKAGEKPKIEMLHSKSRMPFGGFMARYAIDDIYQAIENAQTT
LVFVNTRAQSELLFQMLWEANKAALPIALYHGSLSKEQRRKTEAMMASGMLRAIVCTSAL
ELGIDWGDVDKVIQVGAPKGVSRLLQRIGRANHRLDEPSEALLVPANRFEALECQAAITA
IEKGELDGESPQPGALDTIPQFILNCLCSKADSPDTLYQEILTATPYQGLDRDDFDKLWQ
FTQDGGSALNAYERYQRLARNDDGTFSPANRRVIQRHRQNIGTIVEAGRLKVKRIRRGNQ
GKIIGEVEEYFAQQLTLGDTFYFGGEVLRFEAIRDMQLHAKPAKAKEPKIPSYAGGQMPL
STYLAEGVRAILATQTLWKTLPAQVQEWLKLQQAFSQLPSPEKVLVEQFPFRQAHYTLYY
TFDGRKANQTLGMLLTRRMEKMGIKPLSFSVTDYGLSVASVNPISQVQLQQLFQPDILGD
ELEDWMLQAPMLKRSFRQVAVVSGLTEQRYHASQKTMKQVTFSTDLIYDTLREHDRDHIL
LKVARADAERELLDLRRLANLLIRYVDSATLVNLEKPSPMAIPIVLDVRSEQVKGAGAQA
IIEQANLYAEAETMLDEVRALLSGSLVN
NT seq 2607 nt   +upstreamnt  +downstreamnt
atgacatcacttcccgcggccttttcgaaatggtttaagcaaaagggctggcaattacgc
gactatcagcaaaccatgctgacagaaaaagaccagcacgactgtacattattaatagcg
ccaacaggggcgggcaaaaccctgtccggctttttgcctagcctaatcgaacttgctgag
acatatggtatgagtgagcttgccgagacggtagaagacggggcgccaattgaggtcgct
gagacgagacagctttctggctcgagagaaactgacgaacacgtcgaaacaaaggctaca
gatagacaggcaaagaaaggaaaagaaaagggtggtttcaacggcctacataccctttac
atctcgccacttaaagcactcacgcaagatatccatcgtaatttgttacagcctattgaa
gaaatggcgctcccgataacggctgaaacccgcacgggcgatacgccttcgcacaagcgc
cagcgtcaacgtaaaaagccgccaaacatactgctcactacccctgaatcgctcatgctc
atgctgagctacgccgatgccgataagctttttggcaagcttaaacgcgtgatcatcgac
gaaacccatagtttaatggcaaacaagcgcggtgaccttctatcactggcccttgcccgt
ttaagtgtattctctccccattgtaaacgcattggtctgtctgccaccgtagcctttccc
gaaacgttgggtgcgtggctggctggcagtgacagtgttgccaatatcatcaaagtaaaa
gcgggggagaagccaaaaattgagatgctgcattccaaatcacgcatgccctttggcgga
tttatggcacgctatgctatcgacgatatctaccaagctattgaaaatgcccaaaccaca
ttggtttttgttaatacccgtgctcagtctgaactgctatttcaaatgctgtgggaggca
aataaagcagcgctgcccattgcgctgtatcacggcagtttgagtaaagagcaaagacgc
aaaaccgaagccatgatggccagcggcatgctgcgggccattgtatgtacctcggcgcta
gagcttggcatcgactggggagacgtcgacaaagtcattcaagtaggcgcgccgaaaggc
gtgagcaggctgctgcaaagaatagggcgggctaaccacaggctcgacgaaccgagcgag
gcgctactagtacccgcaaatcgcttcgaagcactggaatgccaagcagcaatcaccgct
attgaaaaaggtgagctagatggtgaaagcccacagccgggcgccctagataccattcca
caattcatcttgaactgtttgtgtagcaaagctgatagccctgataccctgtaccaagaa
atacttaccgccacgccttatcaagggctagatagagatgatttcgataagctatggcag
tttacccaagacggcggtagtgcccttaatgcttatgagcggtatcagcgcctggcaaga
aatgatgatggcactttctcgccagctaatcgccgcgttattcaacggcacaggcagaac
ataggtactattgttgaagcggggcggcttaaagtaaagcgtattcgtaggggaaaccaa
ggtaagattatcggcgaagtagaagagtatttcgctcagcaattaacgctgggagacacc
ttttattttggcggagaagtgctgcgctttgaagctattcgcgacatgcagcttcatgcg
aagcctgcaaaagccaaagagccaaaaatacccagctacgcaggtgggcagatgcctttg
tctacttatttggctgaaggagttcgcgctattttagcgacgcaaacgttgtggaagaca
ctgcccgcgcaagttcaagaatggcttaaacttcaacaggcgttttctcaattgcctagc
cctgaaaaggtgctagtggagcaatttccattcagacaggcgcattatacgctgtactac
accttcgacggacgaaaagcgaatcaaaccttaggtatgttgctaacgcgacgaatggag
aaaatgggtatcaagcctttaagcttcagcgtgaccgattatggcttgtcggtggcatcg
gtaaatccaatatctcaagtgcaactgcagcagctatttcagcctgatattttaggtgat
gaattagaagattggatgctacaagcacctatgctcaagcgctcttttaggcaagtggcg
gtggtaagcggcctgacagagcagcgttatcacgccagccaaaaaaccatgaagcaggta
acgttttctaccgaccttatttacgataccttgcgagaacacgaccgcgaccacatttta
cttaaagtggcccgagctgatgcagagcgtgagctactggatttacgacgactcgctaat
ttacttattcgctacgtagattcagcgacgttagtgaaccttgaaaaaccgtcgcctatg
gccatacccattgtactagatgtacgtagcgaacaagtgaaaggcgcaggggcgcaggct
attattgagcaagctaatttatatgccgaagctgaaactatgttagatgaagttcgtgca
ttgctatcagggtccctcgttaattaa

DBGET integrated database retrieval system