KEGG   Alteromonas mediterranea DE1: amad1_20180
Entry
amad1_20180       CDS       T02340                                 
Name
(GenBank) type I site-specific restriction-modification system, R (restriction) subunit
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
amaa  Alteromonas mediterranea DE1
Brite
KEGG Orthology (KO) [BR:amaa00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:amaa02048]
    amad1_20180
Enzymes [BR:amaa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     amad1_20180
Prokaryotic defense system [BR:amaa02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   amad1_20180
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DEAD Helicase_C HSDR_N HSDR_N_2 AAA_11 nSTAND3
Other DBs
NCBI-ProteinID: AFV87509
LinkDB
Position
complement(4572547..4574937)
AA seq 796 aa
MALNEADTCRVYVTPKLKESGWENNPSAITEQYTFTDGRVQFKGSKVQRGEQKRADYLLK
YTRDFPIAVVEAKPENSPVGQGMQQAKDYAEILGLKFAYSTNGHEILEFDYTTGEEQLLS
RFPTPDELFKRLCGDEGLKDEDLDTLLSPYHHVSGYSPRYYQQIAINRAVQSVLQDKKRS
LITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGD
ARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSN
WREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVIS
EVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAK
TIVFCVDQEHADEMRRVLNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPV
ILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSA
TQNFADPDFDGYPEIEDEVVIDEDGEEVVDDTLTPESEELEVAEDTSEYEVSTEGEGADD
EEEHEPRKYYVDGGSVKITSHLVYELDEDGKQLRVIQYTDYTAEKVKTLFSSLDELKDSW
ANPLKREEIILELQERGIQFDDLVAESGKTDADPLDLLCHIAFNVPLRTRKERADYLKKN
KPDFFDQYGPEARSILTSLLDKYTDHGPKQFSIPDSLQVPPISEYGNVMEIANLFGGALQ
MKTAVDQLQTLLYSQQ
NT seq 2391 nt   +upstreamnt  +downstreamnt
atggccttaaacgaagcagatacttgtcgggtctatgtgacgccaaagctcaaagagtct
ggttgggaaaacaatcctagcgcaataactgaacagtacacatttaccgatggtcgcgtt
cagtttaagggcagcaaagttcaacgtggcgagcaaaagcgagcggattatttacttaag
tacactcgcgattttcctattgccgttgttgaggctaaacctgaaaacagccctgtcggc
caagggatgcaacaggcaaaagattatgcagaaatcttagggctaaagtttgcttactca
accaatggtcatgagatcttagaatttgactataccaccggtgaagagcaattgttgtcg
cgctttccaacccctgatgagttattcaagcggctttgtggcgatgaaggtttaaaggat
gaagatcttgataccttgctgtccccttaccaccatgtttcgggatattccccgcgctac
tatcaacaaatagccataaaccgcgcagttcagtcggtgcttcaagataaaaagcgctca
ttaattacgatggcaacgggtacgggtaagactgtcgtcgcttttcaaattagttggaag
ctgtggagtgctcgctggaatcgtacgggagactacagaaagcctcgcattctatttctg
gcagacagaaatgtgttggtcgatgatccaaaggataaaacatttaccccgtttggtgat
gccaggcacaaaattgaaggcggcaaagttgttaaaagtcgtgaaatttattttgccatt
tatcagtctattgccagtgatgagcgtcgtcctggcttgtataaagaatttccacaagac
ttctttgatctaattatcattgatgaatgtcaccgaggcagtgcccgcgacaacagtaac
tggcgcgaaattctggagtattttgagccagcctttcaaatcggtatgacggcgacgccg
ctgcgtgaagataatcgcgatacttatcgttattttggtaacccaatctacacctacagt
ttgcgccaaggtattgatgacggatttcttgcgccataccgcgtacaccgagttatttcg
gaagtcgatgctgcaggttggcgaccaagcaaaggcgatgtagaccgctttggacgagaa
atcccagatggtgaataccaaaccaaggactttgaacgggttattgcgttaaaggctcga
acagatgcgtttgctaagcatctcaccgactttatgaaacgaaccgatcgttttgcaaaa
acgatcgtgttttgtgtcgaccaagaacacgccgatgaaatgcgtcgggtgcttaataat
ttgaattctgacctttcacgcaagcatccagattacgttgcgcgtgtgacatcagaagaa
gggaaaattggcaaagggcacctcagtcgttttcaagagctggaaactagtactccagtg
atactgaccacatcacagttattaacaacaggggtcgatgcgccaacttgtaaaaatgtt
gtgcttgcgcgtgttgtgaactcaatgagtgagttcaagcaaattgttggccgcggtact
cgtctacgcgaagattacggcaagctgtggttcaacatcattgattataccggctccgcc
acacaaaattttgctgatcctgactttgacggttacccagaaattgaagatgaagtggtg
attgatgaagacggtgaagaagtggtagatgacactttaacaccagagagtgaagagtta
gaggttgctgaagatacgagtgaatacgaagtgagcactgaaggtgaaggcgctgatgat
gaagaggagcacgaaccgagaaagtactacgtagacggtggcagcgttaaaattacgtct
catttggtctatgagctagacgaagacggtaaacagcttcgcgtcatccaatataccgac
tacaccgcagaaaaggtaaagaccctcttctcctcactggacgaactaaaagatagctgg
gctaacccgttaaagagagaagagatcattctcgaattacaagaacgcgggatccagttt
gatgatttggtcgcagagtcgggtaaaaccgatgcagatccattggatttactttgtcac
atagcatttaacgtaccgctgcgaaccagaaaagagcgcgctgactacttgaagaaaaac
aaaccggacttttttgatcagtacggcccagaggcccgctcgatcttgacgtctttactg
gacaaatataccgaccacggccctaagcaattcagtattccggattcgctacaggtaccg
cccatttctgaatatggcaatgtgatggaaatagccaatctctttggcggcgcattgcaa
atgaaaaccgccgtggaccaattacaaacgctgctctatagccagcaataa

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