Alteromonas marina: ACI7YQ_07675
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Entry
ACI7YQ_07675 CDS
T11015
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amab Alteromonas marina
Pathway
amab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACI7YQ_07675 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amab03400
]
ACI7YQ_07675 (mfd)
Enzymes [BR:
amab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACI7YQ_07675 (mfd)
DNA repair and recombination proteins [BR:
amab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACI7YQ_07675 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
Cas3-like_C_2
UB2H
AAA_30
RecG_dom3_C
SecA_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
XLP08697
LinkDB
All DBs
Position
complement(1754901..1758398)
Genome browser
AA seq
1165 aa
AA seq
DB search
MTATLLSLPLPAPKKEASSQDHKHWGQLQGSSAALCISQALSQYKGPIVLITADTPSAMK
LEKEIAFFLSDDTKNTPITLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQVDGIFIVP
VNTLMQRLAPTDYLAKYLLMLNKGQTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSII
DLFPMGSDQPFRIDLFDDEIDSIRYFDTETQRSGEAVNEIRLLPAREFPTDKDAITLFRQ
QFLKKFDANNASESVFSQVSKGTMPSGVEYYLPLFFEKTATLFDYLHPKSLLLLHGDVQD
ASEFFWADVQERYEQYRYNLARPLLAPDELFLPINELFGAIKQWPRASLSSQVLEEKSGT
TNLQCAKLDDIAINSQKKVPAEQLIKTVNHATDNGAKVLFCAETQGRREGLLTVLAKAGI
KPKIVDSFSDFIESHDSIGITVGMVDNSFRWQTSEGELLFITETELLGQKVSQRRLRDKR
SATDESAIIRNLAELSIGQPVVHLDHGVGRYLGLQTLDAGGVTTEYLCIEYAKQSKLYVP
VASLHLISRYTGGDADSAPVSSLGSDAWTKAKQKAAEKVRDVAAELLDVYARRAAKPGFA
YNINWDDYQAFSDSFPFEETPDQAQAIAAVMHDMGSPSAMDRLVCGDVGFGKTEVAMRAA
FLAANAGKQVAILVPTTLLAQQHYENFKDRFAAWPFEIEVMSRFVSGKAQKSVVERIGEG
KVDIVVGTHKLLSSDIKYKDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRT
LNMALSGMRDLSIIATAPARRLSIKTFVQQRNKAVIREAIMREILRGGQVYFLHNEVESI
ARTVEEIAEIVPEARIAMGHGQMRERDLEAVMSDFYHQRYNVLVCTTIIETGIDVPSANT
IIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAISQLEDLGAG
FALATHDLEIRGAGELLGDDQSGQIASIGFSLYMDMLDKAVNALKDGREPSLEDATSGHT
EVELRIPALLPEDYIADVNTRLSLYKRLASCTTQDDIDEFQVECIDRFGLLPEPAKNLIE
VAEIKLKAQALGILKVDLSAQGGTIEFKETTKVNPGYIISLVQTKPNTFKFEGSQKLRLV
KKTETAKERLAFISDIIADFAKESR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgactgccactttattatcgctaccattacctgcgcctaaaaaagaagcctcatcacaa
gatcacaaacactggggccagcttcaaggcagcagtgctgcgctatgcatcagccaagca
cttagccaatacaaaggccctatagttctgattaccgccgacacgccctcggccatgaag
cttgaaaaagaaattgcgtttttcctaagcgacgatacaaaaaatacgcctattacgctg
ttccctgattgggaaacgctgccttatgattcattttctcctcatcaggatattgtatcg
cagcgtcttgaaactctgtttcgctttacgcaacaagtagacggtatcttcatcgttccc
gttaataccctcatgcagcgccttgcgccaactgattatttagctaaatacttacttatg
ctaaataaaggacaaacgctagacagagaccagttcagacgaaacttagagcaagcaggc
tacttacacgtaagccaagtaatgagccacagcgaattctcggtgcgcggcagtatcatc
gacttgttccctatgggaagtgaccagccgtttcgtatcgatttgttcgacgacgaaatt
gattctattcgttatttcgataccgaaactcagcgctctggcgaagcggtcaacgagatt
cgcttgttacccgcgcgcgaatttccaacagacaaagacgccatcactctttttcgtcag
cagtttctgaaaaaattcgatgctaataacgcctctgaaagcgtattttcgcaggtaagc
aaaggcacaatgccaagtggtgtagagtattaccttcccctattctttgaaaaaacggca
acattatttgactaccttcaccctaagagtttgcttttactccacggtgacgtacaagac
gccagcgaatttttctgggccgatgtgcaagagcgctacgagcaataccgttacaattta
gcgcgccctttacttgctcctgatgagctattcctgcctattaacgagttattcggtgcc
attaagcaatggcctcgcgcctcgctatcaagccaagtgctagaagaaaaatcaggcacc
accaacctgcagtgcgcaaaactcgatgacattgcaatcaattcgcagaaaaaagtccct
gctgaacaactcattaaaaccgttaatcacgctaccgacaacggggcgaaagtactgttt
tgtgccgaaactcaaggtcgtcgagaagggctccttaccgtgctggccaaagccggcata
aagccaaagattgtcgatagcttcagtgattttattgaaagccacgacagtattggtatt
acggttggtatggttgataacagctttcgctggcagacatctgaaggtgagctgctgttt
attaccgaaaccgaactactcggacagaaagtaagtcagcgacgccttcgtgataagcgt
tccgccactgatgaaagtgctattatccgcaacctagccgagctttctatcggtcagcct
gtggtgcacctcgaccacggtgttgggcgctatttagggcttcaaaccttggatgcgggc
ggcgttaccaccgagtacttatgcattgaatacgccaagcaatcaaaattatacgtcccc
gttgcgtcgctacaccttatctctcgctataccggcggcgatgccgatagcgcccctgtt
agctcgttaggttccgacgcatggacaaaagcaaagcaaaaggcagctgagaaagttaga
gacgtagcagcagaactgctagatgtgtacgcccgtcgcgctgcaaaaccaggctttgct
tacaacataaactgggatgactaccaagccttttcagacagctttccgtttgaagaaacg
cccgaccaagcgcaagcgattgctgcggttatgcacgacatgggcagtccatcagcgatg
gaccgtttggtgtgcggtgatgttggctttggtaaaaccgaggttgccatgcgagccgct
ttccttgctgcaaatgccggcaaacaggttgcaatattagtacctaccaccttgcttgcg
cagcagcattacgagaactttaaagatcgcttcgccgcatggccttttgaaattgaagta
atgagccgctttgtaagcggtaaagcgcagaagtcggtggtagaacgcatcggtgaaggt
aaagtcgacatcgttgtaggcacacataaactgctgtccagcgatataaaatacaaggat
ttaggccttgttattattgacgaagagcaccgatttggcgtgcgtcaaaaagagaaactt
aagtcccttcgcgccgatgtagatattcttacgctaaccgccacgcctattccacgtacg
ctgaacatggcgctgtctggcatgcgcgatttatctattatcgctaccgcaccggcccgt
cgcctttctattaaaacctttgtacaacagcgcaacaaggcggtgatccgcgaggcaata
atgcgtgaaatactgcgcggcggtcaggtttatttccttcataacgaagtggaaagtatt
gcacgaactgtggaagaaattgcagagattgtgcctgaagcgcgtattgcaatgggccac
ggtcaaatgcgcgagcgcgatctagaagcggtgatgagcgatttctaccatcagcgttac
aacgtattggtgtgtaccaccattattgaaacgggtattgacgtaccaagcgctaacacc
attatcatggatagagccgaccatttaggtctggcacagctacaccaattgcgtggtcgt
gttggacgctctcaccaccaagcctacgcctatttgttaacgccacatccaaagcgaatg
acaaaagatgccgttaagcgcttagaagccatatctcagctagaagacttaggtgcaggt
tttgccctcgccacacacgatttagagatacgaggcgccggcgagttgttaggagacgat
cagtccggtcagatagcaagcattggatttagcctgtatatggatatgctagacaaagcc
gttaacgcgctgaaagatggcagagagccatcgctagaagacgccacatcgggccatacc
gaggtagagctgcgtattccggcactgctgcctgaggattatattgccgacgtaaatacg
cgcctttcgctttataagcgcctggcaagctgcacaacgcaagacgacattgatgaattt
caagtagagtgcattgaccgcttcggcttattgccggaaccggctaaaaacttaattgaa
gtggctgaaattaaactaaaagcacaggcacttggcattctaaaagtagacttgtcggca
caaggcggtaccatagagtttaaagaaaccactaaggtcaaccctggctatatcattagc
cttgttcaaaccaaaccaaacacgttcaagtttgaaggtagccaaaagcttcgcttggtg
aagaagaccgaaacagctaaagagcgcctcgcgtttattagcgatattattgccgatttt
gcaaaggagtcgcgataa
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