Alteromonas marina: ACI7YQ_08045
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Entry
ACI7YQ_08045 CDS
T11015
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amab Alteromonas marina
Pathway
amab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACI7YQ_08045 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amab03019
]
ACI7YQ_08045 (rne)
03009 Ribosome biogenesis [BR:
amab03009
]
ACI7YQ_08045 (rne)
Enzymes [BR:
amab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACI7YQ_08045 (rne)
Messenger RNA biogenesis [BR:
amab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACI7YQ_08045 (rne)
Ribosome biogenesis [BR:
amab03009
]
Prokaryotic type
rRNA processing factors
ACI7YQ_08045 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XLP08766
LinkDB
All DBs
Position
complement(1846223..1849678)
Genome browser
AA seq
1151 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLELPDGMGLIVRTAGVGKSYEEL
EWDLKVLLKHWEAISEVSQEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVLRRRPDDVLSDASYEVELMPAVETETEVSTTAPVKREEPALKGLVAPTAAPVVAPK
EEPVKKADDVPSLFARIGKWINDLFGSESEQEASQDKKQQSDENSKPRNNRSRNNDDRRR
KPRNKNNRRGNQAQNRDQAKDQNREREEQDNRKPRSEQRPEQEDKRSSKGRKPRKAQQPR
DEQPKPKQEKQEGEQQENQAQKKREVAERRKRRDKRRSVRVNKDEVASDTIEQIDAKAPS
APKGDDAVKAPQQESKAQSKSKSDAKPQKATKSDDVEDKAESVVEQEQKPQAKKPAKKAT
DSAAEATTTPDVEKPEEGQAETLDSTDANADENGQKREGRGRSRRSPRHVRAAGQRRKKE
SQLADDSETQVKQPGELESQDSEAKVESPVKSDAPVVEETQAEEPGQLAPADEQPESTQE
KQQTAKLDMEAVQDELQFDAEPLAEKVEPSAEGEKPSAEGEKPSAEGEKPSAEVEKPLEE
ADDSVETADSTEKEPVAEQTRASENKAPVADTAPVADSLAPKEEEKPEAPAASQETTASP
EQAEINLADTSETLGSEKTEEPVSEDATSEAAVETPVVSKQVDDSVASSTEVSLAASGQG
KRGASHPMALPATVNDTFVDVALTAKADDARPALTVSGKTAAMARVASRASAPTTLPKSV
ETADEPETAAE
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaactcagcaagaagagttgcgcgtagcccttgtcgat
gggcaacggttgtacgatttagatatagaaagcccggggcacgagcaaaaaaaagcaaat
atttacaagggtaagataacccgcgttgaacctagcttagaagctgcttttgtcgactac
ggcgctgaacgccacggttttctccccctcaaagaaatagcccgcacttacttccctaaa
ggttacaaattcgaaggccgcccaaacatcaaagatgtgatcaaagaaggccaagaagtt
attgttcaaattgataaagaagaacgcggtcaaaaaggcgctgccctcaccacatttctt
tcacttgcaggcagctatttggtacttatgccaaataatcctcgtgctggtggcatatct
cgccgtattgaaggcgacgagcgcacagagctaaaagagtcgcttagcaagctcgaactt
ccagacggcatgggccttattgttcgtactgctggcgtaggaaaatcttacgaagaatta
gagtgggatttaaaagtacttctgaaacactgggaagctatttcagaggtttctcaagag
cgtgaagcaccgtttctaattcaccaagagagtaacgttattgtgcgtgcgatccgtgac
tatcttcgtcgcgatattggtgaaatcctaattgataaaaccagcatatatgagcaggcg
ctacagcatattcagctagtacgaccagactttgctagccgtgtaaaattgtaccgcggt
gaagttccactgtttagtcactatcaaattgaaagccaaatcgagtctgcattccaacgt
gaagttcgcttaccttctggtggctcaattgttattgacccaacagaggcactaacttcc
atcgatattaactctgctcgcgcaacgaagggcggtgatattgaagaaactgcgctcaac
accaacttagaagccgctgacgaaattgctcgtcagctacgtctgcgtgacttaggtggc
cttgtggttatcgactttatcgatatgacccctgtgcgccatcagcgtgaagtagaaaac
cgcatgaaagatgcagtgagaagcgaccgagcacgggttcagttagggcgtatttcacgc
tttggcctgcttgagatgtctcgtcaacgcttgcgcccgtcgctaggcgaatcagctcac
cacgtgtgcccccgctgttcgggccatggcactattcgcggaaccgaatctttagcgctt
tctattcttcgtattttggaagaagaaagcatcaaagaaaatacagggcaaattgaagcg
caactacctgttccagtagcaacctatctacttaacgaaaagcgtaagtcaattcaactg
ttagaaaagcgtcatggtgttgatttattgcttattccaaacgctaatttagatacgccg
cattaccaagtattacgccgtcgtcctgatgatgttctatcagatgctagctatgaagta
gagttgatgccagcggtagaaacagaaactgaagtttcaaccactgccccagttaagcga
gaagagccagcactcaaaggcttagttgcacctacggcagcgccagtagttgcgcctaaa
gaagagccggttaagaaagctgatgatgtgccttctctatttgcacgtatcggcaagtgg
ataaacgacttgtttggttctgagagtgaacaagaagcaagtcaagacaagaagcaacag
tctgacgaaaatagtaagccgcgaaacaaccgcagtcgtaataatgacgaccgacgccgt
aagccacgaaacaagaacaaccgcagaggcaaccaagctcaaaacagagaccaagctaaa
gaccagaaccgcgaacgcgaggagcaagacaatcgcaaacctcgtagtgagcagcgtcca
gagcaagaggacaaacgcagcagcaagggccgtaagccgcgcaaagcacagcagcctcgt
gacgagcagccaaagcctaagcaggaaaagcaagaaggcgaacagcaagaaaaccaagcg
cagaaaaagcgtgaagtagctgaacgtagaaagcgccgtgacaagcgtcgtagtgttcgc
gtcaataaagatgaagttgcatctgatactattgagcagattgatgcaaaagcgccgtca
gcaccaaaaggtgatgatgcggtaaaagcacctcaacaagagagcaaggcgcaaagtaaa
tctaagagcgatgctaagcctcaaaaagcaacaaagtctgacgatgtagaagacaaagca
gaaagtgttgtagagcaagaacaaaagccacaggctaagaaacctgcaaagaaagctact
gattctgctgcagaggcaacaacgacacctgacgtcgaaaagccagaagaaggccaagct
gaaacgttagactctacagatgctaacgctgacgaaaatggacagaaacgagagggacgc
ggacgttcacgtcgttctcctcgtcacgtccgtgcagccggtcagcgtcgcaagaaagag
tcgcagttagcggatgattcagaaacacaggttaagcagccaggtgagctagagtctcag
gattcagaggcaaaggttgagtctcctgttaaatctgacgcccctgttgttgaggaaact
caagctgaagagccaggtcaattagctcctgctgatgagcagcctgaatcaacgcaagag
aagcaacaaactgctaaacttgatatggaggcggttcaggatgagctacaatttgacgca
gagcctttagccgagaaagtagagccttcagctgaaggtgaaaaaccgtcagccgaaggt
gaaaagccttcagctgaaggtgaaaagccatcagctgaagttgaaaagcctctagaagaa
gctgatgactccgttgaaacagcggactcaactgagaaagaaccagtggctgaacaaact
cgcgcgtcagaaaataaagcaccggtagcagacaccgctcctgttgctgatagcttggcc
ccgaaagaagaagagaaaccagaggctcctgctgcttctcaagaaacaacggcgtcgcca
gaacaagcggagattaacttagctgatacatctgaaacgttaggttctgaaaagacggaa
gagccagtgtcagaagatgcgacatcagaagcagcagttgaaacacctgtagtttctaag
caggttgatgatagtgttgcctcctccactgaggttagccttgcggctagtggacaaggt
aagcgtggcgcatcacatccgatggccctacctgcaacagtgaacgacacattcgttgat
gttgcgctaacggccaaagctgatgacgctcgccctgcactaacagtatcaggaaaaact
gcagcgatggctcgcgtagcgtctcgtgcttcggcaccgactacgttacctaagtcagtc
gaaactgctgatgagcctgaaacggctgccgaatag
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