Alteromonas marina: ACI7YQ_11350
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Entry
ACI7YQ_11350 CDS
T11015
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
amab Alteromonas marina
Pathway
amab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACI7YQ_11350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amab03019
]
ACI7YQ_11350
Messenger RNA biogenesis [BR:
amab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACI7YQ_11350
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XLP05747
LinkDB
All DBs
Position
complement(2587102..2588487)
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AA seq
461 aa
AA seq
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MLQPTADDLWFVPLGGTGEIGMNLNLYGHNGQWLMVDCGVSFDEPLIPSYKIKSTHGEGS
KAGITHRVVAPDPSFIASQKESLAGIVITHAHEDHVGAIPYLWERFQKPIYTTPFTAEVL
RRKLAKSKLANLIPIVEVDAGDIRQIGPFTVNWLAITHSLPEPFALKISTPVGTVLHTAD
WKIDANPITGTPFDVNLYKQLGKENILALVGDSTNATKPGFSISERNCYDGLLSTILPLK
GRVVVGCFGSNIARLISLARVAKKTQRYMGLYGRSLLNMYGIAKQQGIWPDDLPIADAQH
LGYLPPHEVLAVATGSQGEKNTALARLAKDNHPHLQVEKGDTVLFSSIVIPGNEKSVERL
SKSLTDKGVTVIHSEDSSLPIHASGHPCEEELKLMYHWVKPKISIPVHGEHLHLSAHANI
AKESGVLKHYVGQNGDLYRLAPQPSIRRQIVPTGRIPVQQD
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
ttgttgcaaccaacagcggacgacttgtggtttgttcccctaggagggaccggagagatt
gggatgaatctcaatctctatggccacaatgggcagtggctgatggtagattgcggtgtc
tcttttgatgaacccttgataccgagttacaaaatcaaaagtactcatggagaaggtagc
aaagcagggattactcaccgagttgtcgctcccgacccttctttcattgctagtcaaaag
gagtcgctggcaggtattgttattactcatgctcacgaagaccacgtaggtgcaatccct
tatctatgggagagatttcaaaagccaatttacactacgccttttaccgctgaagtactc
cgacgaaaactcgctaaaagtaaattggcaaaccttattccgattgttgaggttgacgct
ggcgatatccgtcaaattgggccatttacagtaaactggctggcgattacccactctctg
cctgagccttttgcattgaaaatatccacaccagtggggaccgttctacatactgctgat
tggaaaattgatgccaaccctattaccggtacaccgtttgacgtaaacctttacaaacag
cttggaaaagagaacatacttgcgctggtaggtgattctactaacgcgacaaaacctggt
ttctccatttccgagcgcaactgttatgatggattactcagcaccattttacccctcaaa
ggcagggtcgttgttggatgctttggtagtaatatcgcgcgccttatttctttagcgagg
gtggcgaaaaaaacgcaacgttacatggggctttatgggcgttcactattaaacatgtac
ggcatcgctaaacagcaggggatttggcctgacgacttgccaattgccgatgcgcaacat
ctcggctatttaccgccacatgaggtgcttgctgtggctacgggtagccaaggcgagaaa
aatacggcgcttgcaaggctagctaaagataatcacccccatcttcaggtcgagaagggc
gatacggtgctgttctcttctatagtgatcccaggcaacgagaaaagcgttgagcgttta
agtaaatcactgacagataaaggagtgacagtgattcatagtgaagacagttctctaccg
attcacgctagcggtcacccttgtgaagaagagctcaagcttatgtatcactgggtaaaa
ccgaagatttctattcctgttcatggcgaacacctccatctttctgctcatgccaacatt
gcgaaagagagcggtgttttaaaacattatgtggggcaaaatggtgatttatataggcta
gcaccacagcctagtattagacgtcaaattgttccaacaggtcgtattcccgttcaacaa
gattaa
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