Alteromonas marina: ACI7YQ_16965
Help
Entry
ACI7YQ_16965 CDS
T11015
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
amab Alteromonas marina
Pathway
amab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACI7YQ_16965 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amab03019
]
ACI7YQ_16965 (rnr)
03016 Transfer RNA biogenesis [BR:
amab03016
]
ACI7YQ_16965 (rnr)
Enzymes [BR:
amab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACI7YQ_16965 (rnr)
Messenger RNA biogenesis [BR:
amab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACI7YQ_16965 (rnr)
Transfer RNA biogenesis [BR:
amab03016
]
Prokaryotic type
tRNA degradation factors
ACI7YQ_16965 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
HTH_12
OB_Dis3
NRho
UPF0158
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
XLP06797
LinkDB
All DBs
Position
complement(3906951..3909368)
Genome browser
AA seq
805 aa
AA seq
DB search
MSDDPHYQREKEKYDNPVASREYLMSLLKEHDNPLSFLDICNLVNAFDEEARIGIQRRLR
AMEREGQVQFTKQKKYILQNRDEIIKGRIIGHRDGFGFLRPEDKSGDLFISAGQMNLFLH
DDVVEARVSGTDRRGRKEAFITQVIEPRSEPIVGRYFVEQGFGMVVPDDSRLQHEIVIPP
ESTHGARMGQVVVVELTQRPRRKMNPVGKIVEVLGEHMAPGMEIEMALRTFDIPHQWPNG
VTKQVEKLTDQVPDEAKEGRMDLRQLPLVTIDGEDARDFDDAVYCEPLDDGGWQLWVAIA
DVSHYVRTGTALDDEAQQRGNSVYFPDQVIPMLPEVLSNGLCSLNPEVDRLCMVCEMTIS
AQGKLEEFQFYEAVMNSHARLTYNKVWGILQGDKELHQRYEPHVPHLRNLHDLYRALKKA
RAKRGAIEFETQEVKFVFNAQRKIENIVPLVRNDAHKLIEECMIMANVSAALMLEKHEAP
ALYRVHDKPDADRLTAFTSYLSEIGIPHRIVEDAEPAAFTDVVLKTRGRVDEELIQTMLL
RSMKQAVYDGDNVGHFGLALEAYAHFTSPIRRYPDLVVHRALKGIIAKQKGKKAVSGAKN
YTVEEVEQLGEQCSMTERRADDATRDVADWLKCEFMLDHVGDTFEGVVSSVTNFGLFVRL
TEYHIDGLVHITSLDDDYYHYDDVKQALVGESGHGQFRLGDTVEVTVAAVNLDERKIDLL
LDKSMLRSAKGKKVKVKSAKKAADKPTRFDNKPRSDKGSRSDKKGSKGKGGSNSSSRSGG
KSSSRGGAKGGSSGKTLSLNKRGKR
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgatccgcattatcagcgcgagaaagagaagtacgacaatccggtagctagc
cgggaatatttaatgagtttactaaaagagcacgacaacccgttgtcgtttcttgatatc
tgtaatttggtgaacgcgttcgacgaagaagcgcgtattggtattcagcgtcgcctacgt
gctatggagcgcgaggggcaggtacagttcactaaacagaagaaatacatacttcaaaac
cgtgatgaaataattaaaggtcgtattatcggccatagagatggttttggctttctacgc
ccggaagataaaagcggtgacttgtttataagtgcagggcaaatgaatttattccttcac
gatgatgttgtagaggcgcgagtgagcggtactgatcgccgcggtagaaaagaagccttt
attacccaagtcatagagcctcgtagcgaacctatcgtgggtcgttactttgtagagcaa
ggttttggcatggttgtgccagatgacagccgcttgcagcacgaaattgtcattccgccc
gaaagtacacatggcgcccgcatggggcaggtggttgtggtagaacttactcagcgccca
cgtcgcaaaatgaatccagtgggaaaaattgttgaagtacttggcgagcacatggcgcca
ggtatggaaatcgaaatggcccttcgcacgtttgatatcccgcatcagtggccaaacggc
gttactaagcaagtggaaaagcttaccgatcaagtgcctgatgaagccaaagaagggcgt
atggatttgcgccagcttccgctggtgactattgacggtgaagacgcccgagatttcgat
gacgctgtttattgcgaacctctcgatgatggtggctggcagctttgggtagccattgct
gatgtgagccactacgtgcgcaccggcacagcccttgatgatgaagcgcagcagcgcggt
aactcagtgtatttccctgaccaagtcatccccatgttacctgaggtgttgtcgaacgga
ctgtgttcactaaaccctgaagttgaccgcctgtgtatggtgtgtgaaatgaccatcagc
gcccaagggaagctagaagagtttcagttctatgaagcagtgatgaactctcatgcccgt
cttacctataataaagtatggggtattctacaaggtgataaagagctgcatcagcgctac
gagccacacgtgcctcaccttcgtaacttgcacgacctttaccgcgctctcaaaaaggcc
cgcgccaaacgtggtgccattgaatttgaaacccaagaagtgaaattcgtcttcaatgct
cagcgcaaaattgaaaatattgtaccgctagtacgtaacgatgcgcacaagcttattgaa
gagtgcatgatcatggcgaacgtaagtgcggccctgatgcttgaaaagcatgaagcgcca
gcgctataccgagtgcacgataagcccgatgctgacaggctaaccgcatttaccagttac
ttaagtgaaataggcattcctcatcgtattgttgaagatgcagagcctgctgcgtttacc
gatgtggtgcttaaaactcgtggccgtgtagacgaagaacttattcaaaccatgttgctg
cgttcaatgaagcaggcggtatacgatggtgacaatgtgggtcactttggtttggccctt
gaggcttatgcgcactttacgtcaccaatacgtcgctatcctgatttagtggtacaccga
gcgcttaaaggaattatcgctaaacagaagggcaaaaaagcagtaagtggtgcgaaaaac
tatacagtcgaggaagtagagcagctaggcgagcagtgttcaatgaccgagcgacgcgcc
gatgatgcaacccgcgatgttgccgactggctgaaatgtgagtttatgctcgatcacgtt
ggcgatacctttgaaggtgtggtgagctcggtgacaaactttggtttattcgttcgctta
acggaataccatatcgacggcctggtgcacattacatcgctagatgatgactactatcac
tacgacgacgtaaaacaagcgctcgttggcgagtcaggccatggccagtttaggttaggt
gacacggtagaagtcacggttgctgcggttaatcttgatgaaagaaagattgatttattg
ctcgataagtctatgctgcgctccgcaaaaggcaagaaggttaaagtgaaatcagcgaaa
aaagcagctgataaacctactcgcttcgataataagcctcgctctgacaaaggctcccgt
tctgacaagaaaggcagcaagggtaaaggcgggtcaaactcgtccagtcgtagcggtgga
aagtcgtcaagtcgcggtggcgcaaaaggcggtagcagcggcaaaacattgtcattgaat
aaaagaggtaagcgttaa
DBGET
integrated database retrieval system
