Alteromonas macleodii ATCC 27126: MASE_01510
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Entry
MASE_01510 CDS
T02246
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
amac
Alteromonas macleodii ATCC 27126
Brite
KEGG Orthology (KO) [BR:
amac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amac03019
]
MASE_01510
Enzymes [BR:
amac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MASE_01510
Messenger RNA biogenesis [BR:
amac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MASE_01510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AFS35871
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All DBs
Position
347250..349946
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AA seq
898 aa
AA seq
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MLKSGTLYPSTYNTFMPFMLQPFSHLPAYELVTPLEEAVAASNVIIGAPPGAGKSTVLPL
SLLKSSLKGKILLMQPRRVVVRNLADYLARQLDENVGETVGYRIKGESKTSSATRLEIIT
EGVLTRMIQQDPELDGVAAIVFDEFHERSIHSDFGLALALEVQSGLRDDLRLVVMSATLD
VAPLQMLLNAHSVLPVVNLNTQGRMFPVDIRYTQDVQAHELVPKTCNIIKQAVGEHDGDI
LVFLPGRGSINAVAKDIKGVAESAGIDVHMLYGALSKSVQQAAITPDPQGRRKIILSTNI
AETSLTIEGVTVVIDSLWENSAQYHPSSDITALTQQRISQASAIQRAGRAGRVMAGTCYR
LCSKSSFERLAKYNAAQIEKEDLSSFLLDTLAWGSSPDTLALLTKPTQAQQQVAQQKLQR
VNAISQSSITPYGRALAQLPCQPHLAHLLLTVKQGIDGLSADDNDALRHAAPFVVALSES
NVSVGGATNVMDALLHANSNTRSQLTQQATRYARYVQNNDGKAQRFKPDINELDEQALGL
CIAIAFPLQVGYRRSASDKSAESSNTTNGKPKTGIVEYKLASGKGAELTAAGSASIFNES
ENGDGPWLAVLDGQLIKSTVAIRLAQSVPESWLRLAFPDAFKEKRSVILNSDTGVMEARV
STGFYEITLNSTPVSGQEKSREKAFWDDALCNAWFAYLDALPLSSWPLSDADWQWWRRVA
MAGKLNLPQDKAFDEPEPWPSSLNALVHQAKDSLAPVLKNCKNIKNLKQLPWKTALNNGL
SWPQQDALATLLPTHVTIPTGREASLDYRDNGDVVLSVKMPELYSQGTPLTIAGGRITVV
CELLSPAGRPLQTTSDLAAFWHGSYKEIQKEMKGRYPKHFWPDDPANASPTSKTKKHM
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
ttgctcaaatcaggtacactatacccatcaacttataacacctttatgccctttatgtta
cagccgttttctcacttacccgcttatgaactcgttacgccgcttgaagaagctgtagcc
gctagcaacgtcatcataggggctcctccgggcgcgggaaagtccaccgtacttcctttg
tcactgctgaaatcatcgcttaaaggaaaaatattacttatgcagccacggcgcgtggtg
gtgagaaaccttgcggactatttagctaggcaattagatgaaaatgtgggcgaaacggtt
ggctatcgcattaagggggagtcgaaaacatcgtctgccactcggcttgagatcataacc
gaaggggtgctgactcgcatgattcagcaagaccctgagcttgatggagtagccgctatt
gtcttcgatgaatttcatgaacgcagtattcacagtgacttcggtttggcactagcgctt
gaagtacagtcggggcttcgcgatgacttacgattagttgtaatgtcggctaccttggat
gtagcaccccttcaaatgttgctcaatgcgcatagcgtactgccagtagtgaacttgaat
acgcaagggcgcatgtttcccgttgacatccgctacacacaagatgtgcaggcgcatgag
ttagtacccaaaacctgcaatatcataaagcaggcagtaggcgaacacgacggtgatatt
ttggttttcctacctgggcgaggaagcattaatgccgttgctaaggatataaaaggcgtt
gctgagagtgcgggcatagacgttcacatgctctatggagcgttaagtaaatctgtgcaa
caagccgctattacgccagacccgcaaggcagacgaaaaatcatattatctaccaatatt
gctgaaacgagtcttaccattgaaggcgtgacggtggttattgatagcctatgggaaaac
agtgctcagtatcatccgtccagtgacataactgcgcttacccagcagcgcatttcgcaa
gcatccgccattcaaagagcggggcgcgcggggcgtgtaatggccggaacctgctatcgg
ttgtgtagcaaaagcagcttcgagcgtttggccaaatacaatgcggcgcaaattgaaaag
gaagacttaagtagctttttgcttgataccttagcctggggcagtagcccagataccttg
gcattgttgacgaagcctacacaagcgcagcagcaggtcgcacaacaaaagcttcagcgc
gttaatgctatctcacaatccagcattactccctatggaagagcgctggcccagttaccc
tgtcagccccatttagcccacttattgctgaccgttaaacaagggattgatggacttagt
gctgatgacaacgacgcgcttcgccacgccgcaccttttgttgtggcccttagcgaaagt
aatgtcagtgtgggcggcgcaacaaatgtcatggatgcgctgctccacgccaatagcaac
acgcgcagtcagcttacacagcaagctacccgttatgcgcgctacgtgcaaaataatgat
ggaaaagcacaacgctttaagcctgatattaacgaactagacgagcaagcccttgggctt
tgtatcgctatcgcatttcctttgcaggtgggctataggcgcagtgcgtcagataaatcg
gcagagagctcgaatacaacaaatggtaagcctaagaccggtatagtcgaatacaaactg
gcaagtggcaaaggtgcagagctcactgctgctggtagtgcgtccatttttaatgagagc
gaaaatggcgatggaccatggctggcagtgctcgacgggcagctgataaaaagcacggtg
gcaatacgcttggcacagtcagtgcctgaaagctggttgcgtttagcctttcctgacgcg
ttcaaagaaaagcgcagcgttattcttaacagcgatactggggtaatggaagccagagta
agtacgggcttttatgagataacgttaaatagcacaccggtttctggacaggaaaaaagt
cgtgaaaaagcattctgggatgatgcgttatgcaacgcatggttcgcctaccttgatgca
cttcctctatcaagctggccgctttctgacgcagactggcaatggtggcgaagagtggca
atggctgggaagctcaatttgccacaagacaaagccttcgatgaacccgagccgtggccg
tcgtcattgaacgctctcgtgcaccaggccaaagacagtttagcacctgtcttaaagaac
tgtaaaaacatcaaaaaccttaagcagttaccgtggaaaacagccttgaataatggtctt
tcttggcctcagcaagatgccttggccacactcttgccaactcacgtgactattccaacc
ggcagagaggctagcctggattatcgcgataatggagatgtggtgctgtcggtcaaaatg
ccagagttatattctcaaggcacgccattaacgatagcgggtgggcgaattaccgttgta
tgtgagctgctgtcgccagcaggtaggccattacaaaccaccagtgatttagccgccttt
tggcatggcagttataaggaaatacaaaaagaaatgaaggggcgctatccaaagcacttt
tggccagatgaccccgcaaatgcatcgccgaccagcaaaacaaaaaagcatatgtag
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