Alteromonas macleodii ATCC 27126: MASE_02610
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Entry
MASE_02610 CDS
T02246
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amac
Alteromonas macleodii ATCC 27126
Pathway
amac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MASE_02610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amac03019
]
MASE_02610
03009 Ribosome biogenesis [BR:
amac03009
]
MASE_02610
Enzymes [BR:
amac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MASE_02610
Messenger RNA biogenesis [BR:
amac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MASE_02610
Ribosome biogenesis [BR:
amac03009
]
Prokaryotic type
rRNA helicases
MASE_02610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFS36082
LinkDB
All DBs
Position
complement(592070..593860)
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AA seq
596 aa
AA seq
DB search
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEERKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPE
VLMAALLKIAQGDEPLILKESDRPDINSKPQRDSRERNSRDRDGRERKPRVPRGNRKPEE
GMQRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPEGMPKETRDT
LQGTRVAGQRLNIREWSDTPPAKGRGDRGNRGDRAPRGNREDRPNRGDRENRKRKN
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaactgtcgacatgacatttaaagacctcaatttaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagctgagagtattcctctt
ttacttgaagggcacgatttactcggtcaggcacagacagggacaggaaaaaccgctgcg
tttgccctgcccatgttggcaaatatcgatcctgaagaacgtaagccgcaattactggta
ttggccccaacccgtgaactagctattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttccagtatacggcggtcagtcgtacgacaaccaaatt
cgccagcttaagcgcggcgttcaggttgttgtaggtacaccaggccgtatcatcgaccac
attaagcgcaaaacgctagacttaagcgaacttaagttcttagtgctagacgaagctgac
gaaatgcttcgtatgggctttatcgatgacgttgaacttattcttagccacgcaccagaa
gagcgccaaaccgcactgttctcggcaactatgcctggcccaattaagaagattactcag
cgatacttgaaagaccctaagcacgttaaaattgcgtctaaggtaagtacagctagcacc
attcgccagcgttattgccaaattgcaccacaccacaagcttgaagcgctaacgcgtatc
atggaagtggaagtgttcgacggtatgatcatattcgtacgtacgaaaaccgctacggtt
gaactagcagataaactctctgctcgtggttacgacgtagaaccactaaacggtgatatt
cctcaggctgctcgtgagcgcactgttgaaaaacttaaacagggtaaaatcgacattctt
gtagctactgacgtagtagcccgtggtcttgacgttgagcgtgtaagccacgttatcaac
tacgatatcccgtacgacagtgaatcttacgtacaccgtatcggccgcactggtcgtgct
ggtcgtcaaggtgatgcgatcctatttatctctcatcgcgaaaagcgcttgttattctct
atcgagaaaactaccaagcagccaattgaagcaatgccaattccttcaattagcgaaatt
aatgaaacacgtttaagccgcttcaaacaatcagttgccgaagcaacccaagacgatagc
attgaatcactaatgcctattgttgagatgattaaagaagaaaacgaagcgtcccctgaa
gtattgatggcggcactgcttaaaattgcgcaaggcgacgaaccgttaattcttaaagaa
tcagatcgtccagatattaacagcaagcctcagcgcgacagccgcgagagaaactctcgt
gaccgtgatggtcgtgagagaaagccaagagtacctcgtggaaaccgcaagcctgaagaa
ggcatgcagcgcttccgcattgaagtaggtcacgtacatggtgcgaagcctggaaatatc
gttggcgctattgctaatgaagcaaacataaattcgaagcacattggcgctatcgaaatt
tatgacaacttcagcacggtagaccttcctgaaggcatgcctaaggaaacgcgcgatacg
ctacagggcacccgtgttgctggtcagcgtttaaacattcgcgaatggtcagatacaccg
ccggctaaaggtcgtggcgatcgtggtaaccgtggtgacagagcgcctcgcggcaatcgt
gaagaccgccctaatcgcggagatcgcgaaaaccgtaagcgtaagaactga
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