Alteromonas macleodii ATCC 27126: MASE_17540
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Entry
MASE_17540 CDS
T02246
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
amac
Alteromonas macleodii ATCC 27126
Pathway
amac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MASE_17540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amac03021
]
MASE_17540 (rpoB)
03400 DNA repair and recombination proteins [BR:
amac03400
]
MASE_17540 (rpoB)
Enzymes [BR:
amac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MASE_17540 (rpoB)
Transcription machinery [BR:
amac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MASE_17540 (rpoB)
DNA repair and recombination proteins [BR:
amac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MASE_17540 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
AFS38998
LinkDB
All DBs
Position
complement(4111679..4115707)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADAQYGLEAAFRSVFPIK
SYSGSSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFDKVSVRIDKDKLMME
VVPDRLRGETAAFDIIDGEGNVVVETGRRISARHTRALEKAGLTELEVPADYLIGRVYAA
TYVNEDTGEVIVSANDELTLENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNR
LEALVEIYRMMRPGEPPTKDAAETLFDNLFFSDERYDLSSVGRMKFNRRLGREELIGAGT
LDKEDIISVMKQLIMIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGLNFGLINSLASFARTNDFGFLETPFRRIVDGVV
TDEIDYLSAIEEGQFAIAQANIALTEAGELVDDLIPCRHRGETTLMPKEDIKYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK
RGGVVDYVDASRIVIKVDEDEMLPGEAGIDIYNLTKYTRSNQNTCINQKPTCSVGDPIVA
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LTDEFEILADGIFARAQTALLRAGVDQAKLDSLPREKWFEIALNSEDAQLELDQIADQHA
EIKLDFDKKFEGKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI
QPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGLGVKIDRMIKEQRELA
ELRDFLKKVYELGENHQEVDIDSFTDHEVRRLAENLRKGVPVATPVFDGARESEIKEMLK
LADIPESGQIALFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtattggaaattccataccttctttcaattcagcttgattctttcaaaaagtttattgag
atcgatgcagatgctcaatacggtttggaagcagcatttcgttccgtttttccaattaaa
agctactcaggtagttcagagcttcagtatgtaagctaccgcctgggagagcccgttttc
gacgttaaagaatgtcaaattcgcggcgtaactttctctgctccgttaagagtaaaacta
cggttagtgttgttcgataaagacgctgcgccaggtaccgtaaaagatattaaagaacaa
gaagtgtacatgggcgagatcccgttgatgactgagaacggtacgttcgttatcaatggt
acagagcgtgttatcgtgtcacagctacaccgttcacctggtgtattctttgatcacgac
aaaggtaaaacccactcgtcaggtaaagtgctttataacgcacgtgtaattccttaccgt
ggttcgtggttagacttcgagtttgacccgaaagataacctattcgtacgtatcgaccgt
cgtcgtaagttgcctgcaacgattatcttacgcgcacttgaaatgacgtctgaagaaatc
ctagatactttcttcgacaaagtaagcgtacgtatcgacaaagacaaactaatgatggaa
gtggttccagatcgcctacgtggtgagacggctgcttttgacatcattgacggtgaaggc
aacgttgttgttgaaacgggtcgtcgtatttctgcgcgccacacgcgtgcactagaaaaa
gccggtcttacagaacttgaagttccagccgattacctaattggccgtgtttacgcagct
acttatgtaaacgaagacacaggcgaagtgattgtaagcgcgaacgacgaactaaccctt
gaaaacctagcggcacttagccaagcgggcatcaaagagttcgaaacgctttacatcaac
gagctagatcacggttcatacatttcagatacgctacgtatcgattcttcaactaaccgc
cttgaagcactagttgaaatttaccgtatgatgcgtcctggtgagccaccaacaaaagat
gcagctgaaaccttgttcgataacctgttcttctctgatgaacgttacgacttgtcttct
gttggccgcatgaagttcaaccgccgtcttggccgtgaagaacttattggtgctggtaca
ctagataaagaagacattatttctgtaatgaagcagctaataatgattcgtgacggtaaa
gacgaagtagatgacatcgatcacctaggtaaccgtcgtatccgttctgtaggtgaaatg
gcagagaaccaattccgcgttggtcttgtacgtgttgagcgtgcagttaaagagcgtcta
agcttaggcgacctagacaacgtgatgccacaagatcttattaacgctaagcctatctcg
gctgcggttaaagagttcttcggttcatctcagctttctcagttcatggaccaaaacaat
ccgctatcagaagtaacgcataagcgtcgtatttctgcattaggcccgggtggtcttaca
cgtgaacgtgcaggcttcgaagttcgagacgtacacccgactcactacggtcgtctatgt
ccaatcgaaacgccggaaggcctgaacttcggtctaattaactcattggcaagcttcgcg
cgtaccaatgacttcggtttcctagaaacgccgttccgtcgcattgtagacggtgtggta
acagacgaaatcgattacttatctgcaattgaagaaggtcaattcgcaatcgctcaggca
aacatcgcgttgactgaagcaggcgagttggttgacgacctaattccatgtcgtcaccgt
ggtgaaactaccttgatgccgaaagaagacatcaagtacatggacgtttcacctcagcaa
atcgtttcaattgctgcaagcattatcccattcctagagcacgatgatgcgaaccgtgca
cttatgggtgcgaacatgcaacgtcaggcagtacctacactacgcgctgataagccgcta
gttggtaccggtatggaaagaactatcgcggttgactcaggtgttactgtagttgctaag
cgcggtggtgtggttgattacgtagatgccagccgtatcgttattaaagtagacgaagat
gaaatgcttccaggtgaagcaggtatcgatatctacaacctgactaagtacactcgttct
aaccaaaacacgtgtatcaatcagaagcctacttgtagtgttggtgacccgattgttgca
ggcgacgtgctagctgatggtccttcaacagacctaggtgaccttgcacttggtcagaac
atgcgtatcgcgttcatgccgtggaatggttacaactttgaggattcaatccttatttct
gagcgtgtagcgcaggaagaccgttttactactatccacattcaagagcttagctgtatc
gctcgtgatactaagcttgggccagaagaaatttcttctgatatcccgaacgtgggtgaa
tctgcactaagcaagcttgatgaatcaggtgttgtttacattggtgcggaagtgaaaggc
ggtgacatccttgtaggtaaagtaacgcctaaaggtgaaacgcagcttacgccagaagaa
aaactactacgtgcaatcttcggtgagaaagcgtctgacgttaaagatacgtctctacgt
gtacctaactctgttcacggtacggtaatcgacgttcaagtatttacccgtgacggtgta
gaaaaagacaagcgtgcgctagaaattgaagatatgcagctacgtcaggttaagaaagac
cttactgacgagttcgaaattcttgcagacggtatctttgcacgtgcacaaactgcactt
ctacgtgctggtgttgaccaagctaagcttgacagcctgccgcgtgaaaagtggtttgaa
atcgcacttaacagtgaagatgcacagctagagctagaccaaatcgctgatcagcatgct
gaaatcaaacttgatttcgataagaagtttgaaggtaagcgtcgcaagattactcaaggc
gatgacctagcacctggcgtgcttaagatcgttaaggtttaccttgcggttaaacgtcac
atccaaccgggtgataaaatggccggtcgtcacggtaacaaaggtgttatctcgactatc
cagcctgtagaagacatgccatacgatgctaacggtacgccggtagatatcgttcttaac
ccactaggtgtaccgtctcgtatgaacatcggtcagatcctagaaacgcacttgggtatg
gctgcacacggtcttggtgtgaagattgatcgtatgattaaagagcagcgcgagctggct
gaactacgtgacttcttgaagaaggtgtacgagcttggtgagaatcaccaagaagtagac
atcgatagcttcacagaccacgaagttcgtcgtctagcggaaaaccttcgtaagggtgtt
ccagtagcaacacctgtattcgacggtgctcgtgaatctgaaatcaaagaaatgctgaag
cttgctgatattccagaaagcggtcagattgctttgtttgacggtcgtaccggtcgcgaa
tttgagcgtccagttacggttggttacatgtacatgctgaaactgaaccacttagtagac
gacaaaatgcacgcgcgttctactggttcttacagccttgttacacagcagcctcttggt
ggtaaagcacagttcggtggtcagcgcttcggtgagatggaagtgtgggcacttgaagca
tacggtgcagcatatacccttcaagaaatgcttaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaagaacatcgtcgatggcgaccatagaatggaacctggcatgcca
gagtcattcaacgtactacttaaagaaattcgctcgttgggtatcaacatcgagcttgaa
gaaaagtaa
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