Alteromonas mediterranea UM4b: I636_08650
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Entry
I636_08650 CDS
T02723
Name
(GenBank) helicase, ATP-dependent
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amad
Alteromonas mediterranea UM4b
Brite
KEGG Orthology (KO) [BR:
amad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amad03019
]
I636_08650
Enzymes [BR:
amad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I636_08650
Messenger RNA biogenesis [BR:
amad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I636_08650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
ResIII
nSTAND3
HA2_N
NACHT
T2SSE
RsgA_GTPase
NTPase_1
SLFN-g3_helicase
DUF4028
PhoH
AAA_23
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
AGQ01584
LinkDB
All DBs
Position
1933202..1937230
Genome browser
AA seq
1342 aa
AA seq
DB search
MSSPIAIKPLYNKLDDCLSADKFRLKRRITLLAQKAKGLGESKGAAPGDKSEASKRKALG
DSTSHSANKGSQKNAQKSAEESLSTQFEKLKADINGSIEKRNWRKANLPKVEYPPLPVSD
KKEDIKDAIANNQVVIVAGETGSGKTTQLPKICLELGLGVNGMIAHTQPRRLAARSVATR
IAEELNTPLGEKVGFKIRFSDQVSERSYVKLMTDGMLLAEMQQDRFLNQYDTIIIDEAHE
RSLNIDFLLGYLRQLLHKRPDLKLIITSATIDPERFSKHFNNAPIIEVSGRTYPVEVRYH
APEDFDEDRDQSDAIIHAVDELMREAPGDILVFLSGEREIRDTQDALSKQHYRNTEIVPL
YARLSAAEQNRIFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGFARISRYSARSKVQRL
PIEPISQASANQRAGRCGRVSDGICIRLYSEDDYLGRPEFTDPEILRTNLASVILQMLAL
GLGDIAAFPFVQPPDNRNINDGFRLLEEIQAIGKGKGKQKGKMQLTPLGRQIARLPIDPR
YARMVIEAERTNALSEVMVIAAGLSIQDPRERPQEKRQQADEKHSEYQDKDSDFISLYNV
WVAFREQQNALSQNQLRKWCKQQFINYLRMREWQDIVSQLKKSIAELGFGISKQEADYQS
IHQAIASGLLSHMGFKDKEREYMGSRNSRFLIFPGSGLSKSQPKWVMAAELVETSKLFAR
MVAKIDPAWVEPLAEHVVQRSYSEPHWSKKRGAVIAFEKVTLFGLPIVMKRAKVYSLIDP
PICHELFIREALVEGNTKLNYSFLEENQALLEQADEFEQKTRRRDLIVDDEELVSFYAKR
IPLEANNDAAFKKWFRQHGSNDSLTFKEEDVYRQQPGQSVANAFPDVWRQGNITLPLRYN
FEPNAVDDGVTVVIPLPVLNQVDNIGFDWLVPGLRHDLIVGLIKALPKRLRRNFVPAPNF
AEACLADISETDKNNRPVPLLEAVTDKLRKMTGVIIESDEWNLAQLDKHLKMHFAVVNDN
GDDIAKGDDLHALKQQCAGQVKQTFEKAATPELERSNIEQWDFESLPETFVQEVGGFEVQ
AFPALVEKGDKVDIALIEEADKAQALHKQGVNVLIKNAMPSPLNYLQSKLPNKAKLGLYF
NPFGQVKALIDDCIFAGIDAIVTDYCEANKTDIRNKTDFEACLDIARANINDKVLEIAKQ
VEQGLTLAHQCQKQMKGNVPLTMINALGDCKAHLAQLVFPGFVSQIGEARLDDWNRYIKG
LARRLEKLPIDPNKDRMHQVTVEKSTKEWEKTCSKYPKGKVPQALLDVRWMIEELRVSLF
AQQLGTAYPISAKRITLHLAEY
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcaccaatcgcgataaaacccctctacaataaacttgatgattgtttaagcgcc
gataagtttcgcttgaagcgccgcattacgctgcttgcacaaaaagcaaaggggttaggt
gagtctaaaggcgcggcaccgggtgacaaaagcgaggcttcaaaacgcaaagcgctcggg
gatagtacgtcgcatagcgcaaataaaggaagtcagaaaaacgcacaaaaatcggccgaa
gaaagtttaagcacgcagtttgaaaaacttaaagcagacatcaatgggtcaattgaaaag
cgcaactggcgtaaagccaacctacctaaggtagagtatccaccgctaccggtaagcgat
aaaaaagaagatattaaagacgccatagccaacaatcaggttgtgattgttgcgggtgaa
actggctcgggtaaaaccactcagctgcctaaaatatgcttagagctaggtttaggtgtg
aatggcatgattgcccatacgcagccgcgtcgtcttgctgctagaagtgtggctacccgt
attgcagaagagcttaatacgccattgggcgaaaaagtgggctttaaaattcgctttagc
gatcaggtgagtgaacgcagttatgtaaagctaatgacagacggtatgctgctcgcggaa
atgcagcaagaccgttttttaaatcaatacgatacaattattatcgatgaagcccacgaa
cgaagcttaaatatcgactttttgctcggctatcttagacagctgttacataagcgccct
gatctcaagcttatcatcacctcagcgaccatcgacccagagcggttctctaagcatttt
aataacgcacctattattgaagtaagtggccggacttatccagtggaggttcgctatcac
gcccctgaagactttgatgaagatcgcgatcaaagcgatgctattattcatgccgttgac
gagcttatgcgtgaagcgccaggcgatatcttagtatttttaagtggcgaacgtgaaata
agagacacccaagatgcgctcagtaagcagcattatcgcaatactgaaattgtgcctctt
tatgcgcggctatccgccgccgagcaaaaccgcatttttcagtcccatagcggcaggcgc
attgtgcttgctacgaacgtggctgaaacgtcgttaacggtgcctggtattaagtatgtt
atcgaccctggtttcgcccgtatttcgcgatacagtgcaagaagtaaagtgcagcggctg
ccgatagagcctatttcgcaggcctctgcgaatcagcgggcagggcgatgcggccgtgtt
tcagacggtatttgtattcgcttgtacagcgaagatgactaccttggtcgtccggagttt
actgaccctgaaattctgcgtacgaatttagcatcagtcattttgcaaatgttagcgttg
gggctaggcgatattgctgcgtttccatttgttcagccacccgacaaccgcaatattaac
gatggttttcgcttgcttgaggaaattcaggcaattggtaaagggaaaggtaaacaaaaa
gggaaaatgcagcttacgccacttggcagacagatagctagactgcccattgacccgcgt
tatgcacgcatggtgattgaagctgagcgaacgaatgcgcttagtgaagttatggttatt
gctgcgggcttgtcgattcaagacccgcgagagcgccctcaagaaaagcgccagcaagct
gacgaaaagcacagtgaatatcaagataaagactctgactttattagcctttacaatgtg
tgggtagcgtttagagagcagcaaaatgcgttaagccaaaaccagctgcgcaaatggtgt
aagcagcagtttatcaactacctacgtatgcgcgaatggcaagacattgttagccagctt
aaaaagtcgattgccgagcttggctttggtatttcaaagcaagaagcggattatcaatct
attcaccaagctatcgccagcggcctgctttcacatatgggctttaaagataaagagcgc
gagtatatggggtctcgtaactctcgctttttaatctttccagggtcaggtttgtcgaag
tcgcagccaaagtgggtcatggcggcagagctggtggaaacctctaaattgtttgcgcgt
atggtggcaaaaattgaccctgcctgggtagagcctttagccgagcacgtggtacagcga
agctactcagagcctcactggtctaaaaagcgcggtgcggttatcgcctttgaaaaagtt
acgctgtttggtctgccgatagtcatgaagcgggccaaggtgtacagcctaatcgaccca
ccaatttgccacgagttgtttattcgtgaagccctggttgaaggcaatactaagctaaac
tacagcttccttgaggagaatcaggcgctactagagcaagcggatgaatttgagcaaaag
acccgtcgtcgcgatttgattgtggatgacgaagagcttgtgagcttttacgccaaacgt
atcccacttgaggcaaacaacgatgcggcttttaagaagtggttcagacagcacggcagc
aacgacagcctaacgtttaaggaagaggatgtttatcgtcagcagccaggccagtcagtg
gctaatgcatttcccgacgtatggcgacagggcaatattacactgccgctgcgctacaat
tttgagccaaacgctgtcgatgacggggtgactgtagtgatcccgctacccgtattaaac
caggtcgataacattggtttcgattggttagtaccggggttaagacacgacttaattgta
gggttaatcaaggccctgcccaaacgcttgcgccgtaactttgtaccagctcctaatttc
gccgaggcctgtctagctgatatcagtgaaacggacaaaaacaaccggcctgtgcccttg
cttgaagccgtaaccgataagcttcgcaaaatgacaggcgtcattattgaaagcgatgag
tggaacctagcccagcttgataagcatttaaaaatgcatttcgcagtggtgaacgacaac
ggggacgatattgcaaagggtgacgacctacacgcccttaaacagcagtgtgcagggcag
gtaaaacaaacctttgaaaaagcggcaacgcccgagctagaacgcagcaacatagagcag
tgggactttgaaagcttgcccgaaacttttgtgcaggaggtgggcgggtttgaggtacaa
gcattcccagcgttagttgaaaagggcgataaagttgatattgcgcttatagaggaagcg
gataaagcgcaagccttacacaaacaaggcgtgaatgtattaattaaaaatgctatgcca
tcgccgctcaattatttacagagtaaactgcctaataaagcaaaactaggcctttatttt
aacccgtttggccaggttaaagcgttaattgacgattgtatttttgcgggtatcgatgcc
attgtgacagactactgcgaagcgaataaaacagatattcgcaacaagaccgacttcgaa
gcctgtctagatattgcccgggcaaacattaacgataaggtgcttgaaattgctaaacaa
gtagagcaggggctcacgcttgctcatcaatgccaaaagcaaatgaaaggcaatgtgcca
ttaaccatgatcaatgcgctaggcgattgtaaagcgcatctggcgcaattagtatttcca
ggctttgtctcacaaataggtgaagcaagacttgatgattggaatcgttacattaaaggg
ttggcaagacgattagaaaaactacccattgatcctaacaaagacagaatgcatcaggta
acggtggaaaaatcgacgaaagaatgggaaaaaacctgtagtaaataccctaagggtaaa
gtgccgcaagcgctattagacgtacgttggatgatagaagaactgcgtgtttcactgttt
gcacagcaactgggtacggcgtaccccatatcagcgaaacgcatcacactgcatttagca
gagtattag
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