Alteromonas mediterranea UM4b: I636_08770
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Entry
I636_08770 CDS
T02723
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amad
Alteromonas mediterranea UM4b
Pathway
amad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I636_08770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amad03019
]
I636_08770
03009 Ribosome biogenesis [BR:
amad03009
]
I636_08770
Enzymes [BR:
amad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I636_08770
Messenger RNA biogenesis [BR:
amad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I636_08770
Ribosome biogenesis [BR:
amad03009
]
Prokaryotic type
rRNA processing factors
I636_08770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGQ01608
LinkDB
All DBs
Position
complement(1965031..1968435)
Genome browser
AA seq
1134 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPDGMGLIVRTAGVGKSYEEL
EWDLKVLLKHWEAISEVAEGREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVLRRRPDDVVSEASYDVELMPAVEAETETTTTTPVKREEPALKGLVAPTAAPVVAPK
EEPAKKAEDVPSLFARIGKWISDLFGSEGEEESNKDKKQQSTDTNKNRNNRSRNNDDRRR
KPRNKNQRRNNSSQNRDQNKDQGRDEQQDNRKARGDQRQDQRQDQDDKRNNKGRKPRKAQ
QPRDEQQKPKHEKQEGEQQENQAQKKREVAERRKRRDKRRSVRVKKDDNTPSIVEQTEAQ
AVPAQKGNEAVKAPQQDAKAQSKPKADAKPQKAVKADEVEAQSGNTAAQKQETKKPAKKP
VDKASEEKSAREADKVEGSQTDSADATEANSEENGQKREGRGRSRRSPRHVRAAGQRRKK
ESQQVDEAETQAKQPGELEPQEPETSTVATQTEAPAVEETQAQEPGKLAPSEEQPASNQE
KQDTANLDVEAVQDELQFDVEPSAGKKPLAEEQPSAEEQPSAEETPVGGNTTSADENSVA
KAAPLSQEEAVAKAQASTESSTSSDELASEEAAPSEVKATSDNASEQAAEESASASPEQV
EINLAETTEAAVETKANAPVAKAPAKQQVSETSSLAASGKGKRGASHPMALPAEVNDAFV
DLALTAKADNERPALAVSGKTAAMAQAGSRASAPTTLPKSVDANAEPNADAVAQ
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaacaagaagagttgcgcgttgccctagtcgat
gggcaacggttgtacgatttagatatagagagtccaggacacgaacaaaagaaagcaaat
atctacaagggtaaaattacccgtgttgaacccagcttagaagcagcgtttgttgactac
ggcgcagagcgtcatggattcctaccccttaaagaaatagcccgcacttacttccctaaa
ggttacaaattcgaaggccgccctaacatcaaagatgtgattaaagaaggccaagaagtt
atcatccaaattgataaagaagagcgcggccaaaaaggcgcggcactaaccacattttta
tcgcttgcgggaagttacttagtgcttatgccaaacaaccctcgtgctggcggtatttct
cgccgaattgagggtgatgagcgcactgagcttaaagagtcactaagcaaacttgacctt
ccagatggcatgggccttattgttcgtaccgctggtgtaggtaaatcttacgaagaatta
gagtgggatttaaaagttcttcttaagcactgggaagcaatttcagaggttgctgaaggt
cgtgaagcaccgtttttaattcaccaagaaagcaacgttattgttcgcgctatccgcgac
tatctacgtcgtgatattggcgagattcttatcgacaagaccagcatctacgagcaggca
ctacagcatattcagctagtccgtcctgatttcgcaagccgtgtaaagctttatcgcggt
gaagttccactatttagtcactatcaaattgaaagccaaatcgagtcagccttccaacgt
gaagttcgcctgccgtctggtggttcaattgttattgacccaacggaagcgttgacttcc
attgatatcaactctgcccgtgctactaagggtggtgatatcgaagaaacagcccttaac
actaacctagaagcggctgatgaaattgcccgtcaattacgccttcgcgatctaggtggt
cttgttgttatcgacttcattgacatgacccccgttcgtcatcagcgtgaagttgaaaac
cgcatgaaagatgcggtaagaagcgacagagcgcgtgtacagttagggcgtatttcacgc
tttggtctattagaaatgtcacgccagcgcctgcgcccttctctcggtgagtctgcgcat
cacgtgtgccctcgctgttcaggccacggtactattcgcgggactgagtctttggcgctg
tctattcttcgcatactagaagaagaaagtattaaagaaaatacagggcaaattgaagcg
caattgcctgtacccgtagcaacctacttactgaacgaaaaacgtaagtctattcagcta
ctagaaaaacgtcacggtgtagatttgctgctcattccaaacgcgaacctagacacaccg
cactaccaagtattgcgtcgtcgccctgacgatgtggtatctgaagccagctacgacgtt
gagttaatgcctgcggtagaagcagaaactgaaacgacgactacgacgccagttaaacgc
gaagaacctgcgcttaagggcctagttgcaccaacggctgcaccggttgttgcacctaaa
gaagagccagcgaagaaagctgaagacgtgccttcattatttgcgcgtattggaaagtgg
atcagcgacttgtttggctctgaaggtgaagaagagagcaacaaagacaagaaacagcaa
tctactgacacaaataagaatagaaacaatcgcagccgcaataacgacgaccgtcgtcgt
aagccacgcaataaaaaccagcgtcgtaataactcgtctcaaaacagagaccagaataaa
gaccaaggtcgtgacgagcagcaggataatcgcaaagcacgcggtgatcagcgccaagac
cagcgtcaagatcaagacgacaagcgcaacaacaaaggtcgcaagccacgtaaggcgcag
cagcctcgcgacgagcaacaaaagcccaaacacgagaagcaagaaggcgaacagcaagaa
aaccaagcgcagaagaagcgtgaagttgctgaacgcagaaagcgccgtgacaagcgtcgt
agcgttcgtgtaaagaaagatgacaatacgccaagcattgtagagcaaacagaagcgcaa
gcggtacctgcccagaagggcaacgaagctgtaaaagcacctcaacaggatgcaaaagcg
caaagtaagccgaaagctgacgcaaagcctcaaaaagcggtgaaagccgatgaggtagaa
gcacagtcaggcaatacggctgctcagaaacaagaaacgaaaaaaccagctaaaaagcct
gtagacaaagcgtctgaagaaaaatctgcacgagaagccgacaaggttgaaggcagccaa
acagatagcgctgacgctacagaggcgaacagcgaagaaaacgggcaaaaacgcgaagga
cgtggtcgttcgcgccgttctcctcgtcacgtacgtgcagctggtcagcgtcgtaagaaa
gagtctcagcaagttgatgaagctgaaacacaagcgaagcaacctggcgaacttgagcct
caagagccagagacaagcacagtagctacgcaaacagaagcgccggctgttgaagaaact
caagcacaggagcccggaaagctagcgccatctgaagagcaaccagcatctaatcaagaa
aagcaagacaccgcgaaccttgacgttgaagcggttcaagacgaacttcagtttgatgta
gagccttcagcgggtaagaagcctttagcggaagaacagccttcagcggaagaacaacct
tcagcagaagagactcctgtaggaggcaatacaacttcagctgatgagaactctgtcgct
aaagcagcccctctttcacaagaagaggcggttgcaaaagcgcaggcttccaccgagagc
agcacctcatctgatgaattagcgtctgaagaggctgccccttctgaagtgaaagcgacg
tctgacaacgcgtcagaacaagccgcagaggaaagcgcttcagcatcgccagagcaggtt
gaaatcaaccttgcagaaacaaccgaagcagcagtagaaactaaagcgaacgcaccggta
gcgaaagcgcctgctaagcaacaggtttcagaaacgtcaagcttagctgcaagcggtaag
ggtaagcgcggcgcatctcatccgatggcgctacctgctgaagttaacgacgcctttgta
gatcttgcgttaacggctaaagccgataacgaacgtccagcgctggccgtttcgggtaaa
acagccgcaatggctcaggcaggctctcgagcatcagcgccaacaacactacctaagtcg
gttgacgctaacgcagaaccaaacgccgacgcagtagcgcaatag
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