Alteromonas mediterranea UM4b: I636_09610
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Entry
I636_09610 CDS
T02723
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amad
Alteromonas mediterranea UM4b
Brite
KEGG Orthology (KO) [BR:
amad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amad03032
]
I636_09610
03400 DNA repair and recombination proteins [BR:
amad03400
]
I636_09610
Enzymes [BR:
amad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I636_09610
DNA replication proteins [BR:
amad03032
]
Prokaryotic type
DNA Topoisomerases
I636_09610
DNA repair and recombination proteins [BR:
amad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I636_09610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AGQ01774
LinkDB
All DBs
Position
2149085..2150107
Genome browser
AA seq
340 aa
AA seq
DB search
MHEDDSHLSIKRIACGNKRFYYRYASGKKVTGQRVINRIKKLVIPPNWRDTFISRDSKAS
VQAIGYDEKGRKQYIYHEKWHEQQQVQKFERLIAFGNALPAFREHCISLISQSSWTLERA
CALVCLLLDYTGARVGNTQYSKENNTYGLTTLRRKHVQAQCDDSVELAYIGKHGKPRTLK
VNDPELASLICDCAQQQGYCLFRYQDNRKQWHDVTSEDVNAFIHEKLSEQFSCKDFRTWA
SSRFALTVMPNVYERVASSKTKKWESTLSKTVSAELGNTPAVCRKYYIHPKLFVIKNQGE
AFEKTLNRVRSLAGEDCTHITHLLPVEKLLLDVISTKSNE
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
gtgcatgaagatgatagccacctatcaattaagcgcattgcgtgcggaaataaacgtttt
tactatcggtacgccagtggtaagaaagttactggtcaacgtgtgataaaccgcataaag
aaactagttatcccaccgaattggcgagatacctttatcagccgcgacagtaaggcgagt
gttcaggcgattggatacgatgaaaaaggtcgtaagcaatacatttatcatgagaagtgg
catgagcaacagcaggtacaaaagtttgagcggttgattgcttttggcaatgcccttcca
gcgtttcgagagcattgcatttctctcatttctcaatcttcctggacgctagagcgtgca
tgtgcgcttgtttgtcttttattagactacactggcgctagggtagggaatacgcagtac
agtaaagagaacaacacctatgggcttacgacgctgcgacgcaaacacgttcaggcgcag
tgcgacgacagtgtagaacttgcgtacatagggaaacatgggaaaccgcgaaccctgaaa
gtgaatgacccagaattggcgtctttaatatgtgattgcgcacaacaacaaggttattgc
ttatttcgctatcaagataaccgtaaacaatggcacgatgtaacgagcgaagatgtgaac
gcgtttatacatgagaagctgagcgaacaatttagttgtaaggactttaggacttgggcg
tcgagccgttttgccctaacggtgatgcccaacgtatatgaacgtgtagcaagttcaaaa
actaaaaagtgggaaagcacattaagtaaaaccgtatcagctgaactaggcaatacgcca
gcggtttgcagaaaatattatattcacccgaaactatttgttattaaaaaccagggggaa
gctttcgaaaagacgctaaatcgtgtgcgatcgctggctggtgaagattgtacacatatc
acgcacttactgcctgtagaaaagcttcttttggatgttatttctactaagagcaatgag
tga
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