Alteromonas mediterranea UM4b: I636_11495
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Entry
I636_11495 CDS
T02723
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
amad
Alteromonas mediterranea UM4b
Pathway
amad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
I636_11495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amad03400
]
I636_11495
Enzymes [BR:
amad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
I636_11495
DNA repair and recombination proteins [BR:
amad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I636_11495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
ParB
AAA_11
DUF5321
GatB_Yqey
DUF3067
DUF6401
Motif
Other DBs
NCBI-ProteinID:
AGQ02151
LinkDB
All DBs
Position
complement(2584923..2588933)
Genome browser
AA seq
1336 aa
AA seq
DB search
MSNITPSSASDMATQTQLETNKKANNDAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLY
LRLLLEKKLTVKEILVMTFTKAATEEIKGRIAKTLREAFLIWQQAKENDNQIDSNCDPVY
QHLFTRCNTDESMALLKAAQLELDEASVFTIHAFCQHVITQLAFNSGFAMSLNLGNDTSD
LYLQAAEDYIRKVSKNEDDFRLLAESGWHTPERLLLEFNASIKSTLTPLMLSEQDIELAY
QRQLDESPHTSVAYVKTLSQSVEDNEGLLVEQLIKTPAHKKERPQELAALKSWLRSCADS
GQYYLPPPEAEAFVKGTRYARNSSGVKEILTPIKEFATALKKVFGEKDKALAKVPVFKLV
IEAIAFIKGRVDKQKKQLGVIDFDDLIRMLADEVVKPNNTLVPELRKKFPVALIDEFQDT
DAKQYAILDAVYPNASSNSASQTETDLSNDNEESASARVSALLMIGDPKQAIYRFRGGDI
FTYLKAGRQADYRWVMNTNWRSVEGMVKAYNRLFYGAPVASNTPTDVFGFDIKYNPVEFT
PKAAAAKTPLRDPAAQRSAMNYVSLCLEEKENTNIMRRKMAQWIAQEIYRLLNEAQFQLD
NGETKPVKPQDIAILVKDRTEAGAIKNVLQQKGLACVYLSDRSNLFASAEAKDVLRLLNG
IWHANDTSNVSSSLASPLWGYSPQTLIELLYHEDDAMWDKAMDKVLSLRDMWLQKGCMSV
LLHLMQDSYVPHADNVERALTNYQHLAEVLEKASTTHQRPEQLLDWLNKQIHKPESDEEL
TLRLESDSQLIRLITQHGSKGLEYPIVFVPYATGYKDASKNGKSTSQIFTFYDEDKQDLQ
MQLGQTAQAIARVQRESEAEDMRLAYVAVTRAAHRCYMGVIPLANNEKSALARALGLSGD
ESTNRDWPSVLRRVAEEDESHASYIDGDEFEEIYSGFEQGDAIPQLTALQFTGTASEEWR
LYSFSAMSRLTTVGSVKSTDTVEGAGQSLPSVPVLRTVRDEEVYALDTLSTDGEILGAID
VDSHTPLTQTSAVTKNDLRFTLEKGASAGNLLHDILEHSDFSAPVWEETGKELVNRFGLE
EKRTPFLYEWLEEVLQTPLYPNVQLCMSDLTLEQTLREAEFYFPMNDTQWKQLREVLNTH
RQSVAETLGGEAEPAPQLITAKLKGMMHGFIDLIFEHDGQFFVADYKSTWLGDTLESYMP
SALFHNNQHHLYDLQYLIYCLALHRYLSNTLPDYEPDIHFGGVYYLYLRGMHPENEQGEG
VFYTHIPSSLLHQLDAIFASKSATHTPPDPLDNGEENEAPLSEPDSADPLQKDTNANSSS
ESQKPSGQQQFSFDDE
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatattaccccatcctctgcaagcgatatggcaacccaaacccagcttgaaacc
aataaaaaggccaacaatgacgcgcaactgcttgatgtggtagcaatgccattaaaaggg
cggcatctaatagaagccagcgcagggacgggtaaaacctttaacattacccggttatat
ttgcgcttactgttagaaaaaaagctgacggtaaaagaaatattggtaatgacgttcacc
aaagctgccaccgaagaaataaaagggcgtattgccaaaaccttaagagaggcgtttctg
atttggcagcaagccaaagagaatgacaatcaaattgacagcaactgcgaccctgtttat
cagcatttgtttactcgctgtaataccgacgaaagcatggctttgctaaaagctgcacag
ttagaacttgatgaagcgtcggttttcactattcacgccttctgccagcacgtcattacc
caattggcgtttaacagtggttttgccatgtcgttaaacttaggtaatgacactagcgat
ttgtaccttcaggcggcagaagactacattcgaaaggtgagcaagaacgaagacgatttt
aggctgttggcagagtcagggtggcatacacctgaaaggctgttactggagtttaatgcc
agcattaaaagtactctgaccccattaatgcttagcgagcaggatattgagcttgcctat
caaaggcagctagatgaatcgccgcatacttctgtggcctacgtaaaaacgctatcgcaa
agcgtagaagataatgaggggttgttagttgagcagcttattaaaacacctgctcataag
aaagaaaggccgcaggaattggccgcattaaagagctggctacgttcatgcgcagatagc
gggcaatattacttacccccgcctgaagcagaggcatttgttaaaggcactcgctacgcg
agaaattcttcaggggtaaaagaaatactaacgccgattaaagaatttgctactgcattg
aaaaaagtattcggcgaaaaggataaggcactggctaaagtacccgtgtttaagctggtt
atagaagccattgcgttcattaaagggcgcgttgataaacagaaaaagcaacttggtgtt
atcgattttgacgatcttattcgcatgttagccgatgaggtggttaagcctaacaatacg
cttgtccctgaacttcgtaaaaaatttcctgtggcgcttattgatgagttccaagatacc
gatgccaagcaatacgctattttggacgcggtttatcccaatgcatcgagcaattcggcc
tcacaaacagaaacagatctttcaaacgataacgaggagagcgcgtcggcaagagtcagt
gcgttattaatgattggcgaccctaaacaggcgatatatcgctttcgcggaggggatatc
ttcacctacttgaaagcgggcagacaagcagactatcgctgggtaatgaacaccaactgg
cgctcggtagaggggatggtaaaagcctataaccggttattttatggtgcacctgtggca
tcaaataccccaactgatgtgtttggctttgatatcaaatacaaccccgttgaatttacg
cccaaagcggcagcggctaaaaccccattgagagaccctgcagcgcagcgtagcgcgatg
aattacgtgagcctgtgcttggaagagaaagaaaataccaacattatgcgtcgtaaaatg
gcgcagtggattgcgcaagagatttatcgcctgctaaacgaggctcaatttcaattggac
aacggcgaaacaaaaccggtaaagccgcaagatatcgctatcttggtaaaagacaggacc
gaagccggcgctattaaaaacgttctacagcaaaaagggttagcctgcgtttatttaagt
gatcgcagcaacttgtttgccagtgccgaagcgaaagatgtcctcaggcttcttaacggt
atatggcatgcgaacgataccagcaacgtttcctctagcttagcatctccgctttggggc
tatagcccgcagaccctcattgaactgctttaccacgaagatgatgctatgtgggataaa
gcgatggacaaagtattgtctttacgcgacatgtggcttcaaaaaggctgtatgagcgtg
cttttgcacctaatgcaagacagctacgtcccccatgctgataacgtggagcgcgcgctt
acaaactatcaacatcttgccgaagtgctggaaaaagccagtaccacgcaccagcgaccc
gaacagctactcgactggttaaataaacaaattcacaagccagaaagtgatgaagaactt
acgttacgccttgaaagtgacagccagctaattcgccttattacccagcacggttcaaag
ggccttgaataccccatcgtgtttgttccttacgcaaccggctataaggatgcatcgaaa
aatggtaaatctacgtcacaaatatttaccttttacgatgaagacaagcaagatttgcaa
atgcagttaggacagaccgctcaagctatagctcgtgttcaacgcgaaagcgaagcagaa
gacatgcgccttgcttatgttgcggtgacgcgtgcggcacaccgttgttatatgggggtt
attccactggctaataacgaaaaaagcgcgctggcccgcgccttgggcttgagtggcgat
gagagtacgaacagagactggccgagtgtattacgccgtgtcgccgaggaggatgagtct
catgctagctatattgacggcgatgaatttgaagaaatctattcaggttttgaacaaggt
gacgcgatacctcaactcacagcactacaatttacgggtactgcaagcgaagaatggcgg
ctctattcattttcagccatgagccgtttaactaccgtaggctcggtgaaaagtacagat
actgttgagggcgcgggtcaaagccttccaagcgtacctgtacttcgaaccgtacgcgat
gaagaagtgtacgcgctcgatacgctttccactgacggagagatacttggtgctatagat
gtagactctcacaccccgttgacacaaacgagcgcagtaacgaaaaatgacttgcgcttt
acgctagaaaagggcgcaagtgcaggtaacttacttcacgatatcttagaacacagtgat
tttagtgcgccggtttgggaagaaactggcaaagagttagtgaatcgctttgggttagag
gaaaagcgtacgccttttctttacgagtggcttgaagaagttttacaaacgcctttgtac
cccaatgtgcaactgtgtatgagtgacttgacgttagagcaaactctgcgcgaggctgag
ttttattttccaatgaacgatacccagtggaaacagcttcgagaagtgcttaatacccat
cggcaaagcgtggcggaaaccttaggcggtgaggctgaaccggctccccagctcattacg
gctaaacttaaaggtatgatgcatggatttatcgatttaatttttgaacatgacggtcag
ttctttgtagccgattacaagtcaacttggttgggtgatacccttgaaagctacatgcct
tcagcgctgtttcacaataatcagcaccacctttatgatcttcagtatttaatatactgt
ttagcgttacaccgctatttaagcaatacgctgcctgattatgaacccgatatccacttt
ggcggcgtttattacctttatttacgtggtatgcacccagagaacgagcaaggtgaaggg
gtgttttatacccatattccatccagtttgcttcatcaactggacgctattttcgcaagt
aaaagcgctacgcacacccctccagacccgctagataatggggaagaaaacgaggcaccg
ttaagtgaaccagattcggctgacccacttcaaaaagatacgaatgctaattcttcaagt
gaaagccaaaaaccttcgggtcagcagcaatttagtttcgacgacgaatag
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