Alteromonas mediterranea UM4b: I636_13035
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Entry
I636_13035 CDS
T02723
Symbol
rnc
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
amad
Alteromonas mediterranea UM4b
Pathway
amad03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
amad00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
I636_13035 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amad03019
]
I636_13035 (rnc)
03009 Ribosome biogenesis [BR:
amad03009
]
I636_13035 (rnc)
03036 Chromosome and associated proteins [BR:
amad03036
]
I636_13035 (rnc)
Enzymes [BR:
amad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
I636_13035 (rnc)
Messenger RNA biogenesis [BR:
amad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I636_13035 (rnc)
Ribosome biogenesis [BR:
amad03009
]
Eukaryotic type
90S particles
RNase
I636_13035 (rnc)
Prokaryotic type
rRNA processing factors
I636_13035 (rnc)
Chromosome and associated proteins [BR:
amad03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
I636_13035 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
AGQ02452
LinkDB
All DBs
Position
complement(2939961..2940647)
Genome browser
AA seq
228 aa
AA seq
DB search
MQGIDKYLRLYKAIGYTFNNEALLEQALTHRSAAKQHNERLEFLGDAILGMIIGETLFKR
FPTVPEGKLTRMRSTLVKGDTLAELAKEASVGELLNLGPGELKSGGHRRSSILADAVEAI
LGAIYLDSGMDEVRGVIDRLWESRINQLDPNAHPKDSKTRLQEFLQGRKQALPTYEVLSI
SGKDHAQTFEVCCKVESLPDAVVAPGNSRRKAEQEAARLTLEKLDDNA
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgcagggaattgataaatatcttcgcttatacaaggcgataggctacacatttaacaat
gaagcgttgttagaacaagcgcttactcaccgaagtgccgctaagcagcacaacgagcgc
ttagagtttttaggtgatgccattttgggcatgattataggcgagactttatttaagcgc
tttcctactgtgccagaaggcaagctcaccagaatgcgttcgaccttggttaaaggtgat
acgctggcagagttggccaaagaagccagtgtgggcgagttgctcaacttaggtcccggt
gaactgaaaagtggcggtcaccgcagaagttctattttggctgacgccgttgaagctatc
ttaggtgctatctacctcgattcaggaatggacgaagtacgaggcgttatcgacaggcta
tgggaaagtcgcattaatcaattagatcctaatgcacacccaaaagacagtaagacgcgc
ctgcaagagttcttacaagggcgcaaacaggcgctgccaacctatgaggtgctgtctatt
tcaggcaaagatcacgcacagacatttgaagtgtgctgtaaagtagaaagtctaccagac
gcggttgtggcgcctggcaatagtcgtcgtaaggcagaacaagaagctgctcgtttaaca
ttggagaagcttgatgacaacgcatga
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