Alteromonas mediterranea UM4b: I636_15945
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Entry
I636_15945 CDS
T02723
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
amad
Alteromonas mediterranea UM4b
Pathway
amad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I636_15945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amad03019
]
I636_15945
Enzymes [BR:
amad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I636_15945
Messenger RNA biogenesis [BR:
amad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I636_15945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
Gag_p24
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGQ03023
LinkDB
All DBs
Position
complement(3596622..3598064)
Genome browser
AA seq
480 aa
AA seq
DB search
MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPIL
QRLMSGPKVSANNVRALILTPTRELAAQVEESICAFSEFLPLKTAVVFGGVGINPQMIKL
RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPEDRQ
SLLFSATFSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLVTIDKSKKTTALICLIKQ
QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGDIKVLVAT
DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSAEELQNLKDIET
LIQKLLPRETLEGFEPQQVVPPTTLSKPKKPKKAKKPKAPQGEGSSQSEKGAQSKRNGQS
TNNRSGNGGNRSSKSNGRGNTSGKPVRQRNTGSEGNGTRRPSKRRSSNGSNQSSASSAKA
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacccaattagggctcgctgaacctttgttgaaagctattgaaaaacgtggg
tttagcacaccatcacctatccaagaaaaggcaattccagaagtattggaagggaaggat
gtgctagcagcggcgcaaacgggaaccgggaaaacggcgggtttcggccttccaattcta
caaagattgatgtcgggtccaaaggtgtctgctaataacgttagggcgcttattttgacg
ccaactcgtgagttagctgcccaagttgaagaaagtatttgcgcatttagcgagttttta
ccgttaaaaacagccgtcgtatttggtggtgtaggcattaaccctcaaatgataaagtta
cgcaaaggcgtagatgtacttatcgcaacaccaggcaggttgttagatttatatcagcaa
aacgcggtgaagttttctcaacttgaagttttggtattagatgaagccgacagaatgtta
gatatgggctttattcacgatattaagagagtgcttaaactgttgcctgaagaccgtcaa
agcttacttttctcagccaccttttctgacgaaataaccacgctggccaaaaccattaca
cgcaacccggtaagtatttcaaccgcgccggctaacactaccgtcgatgctgtagagcag
catctagtgaccattgataaatcgaaaaaaaccactgcgcttatttgtttgataaaacaa
caaaagtgggaacaggtactcgtatttagccgcacaaaacacggcgccaaccgcattgca
gaaaagttgactcggtcaaaaattcctagtgcagctatacatggtaataaaagccaaggg
gcgagaacaaaagccctcgctgatttcaaaaatggtgatataaaagtactggttgccacc
gatattgcggcccgtggtattgatatcagtgaattacctattgtggtaaatcttgatttg
ccaaatacggcagctgactacgtacatagaataggccgtactggacgtgctggtgccagc
ggccaagcttggtcatttgttagcgccgaagagctacagaatcttaaagatatagagaca
cttattcaaaaattgcttcctcgtgaaacgctagaagggtttgagcctcagcaagttgta
ccgcctacaacgctatctaaaccgaaaaagcccaagaaagcgaaaaagccgaaagccccc
caaggtgaaggtagcagccagagtgaaaaaggcgcgcaaagtaaaagaaatgggcaaagt
acaaataacagaagcggaaacggtggtaatcgctcaagtaaatccaatggacgaggaaat
acgagtggtaaaccggttaggcaaagaaatactggctctgagggcaatggtactcgtcgc
ccatcaaagcgccgaagcagtaacgggtcaaaccaaagcagtgcatcgagtgctaaggct
taa
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