Alteromonas mediterranea UM4b: I636_17195
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Entry
I636_17195 CDS
T02723
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
amad
Alteromonas mediterranea UM4b
Pathway
amad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I636_17195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amad03019
]
I636_17195
03016 Transfer RNA biogenesis [BR:
amad03016
]
I636_17195
Enzymes [BR:
amad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I636_17195
Messenger RNA biogenesis [BR:
amad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I636_17195
Transfer RNA biogenesis [BR:
amad03016
]
Prokaryotic type
tRNA degradation factors
I636_17195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
UPF0158
OB_RNR_1st
OB_Dis3
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AGQ03265
LinkDB
All DBs
Position
complement(3894669..3897086)
Genome browser
AA seq
805 aa
AA seq
DB search
MSDDPHYQREKEKYDNPVASREYLMSLLKEHDKPLSFLDICNLVNAFDEEARIGIQRRLR
AMEREGQVQFTKQKKYILQNRDEIIKGRIIGHRDGYGFLRPEDKSGDLFISAGQMNLFLH
DDVVEARISGTDRRGRKEAFITQVIEPRSEPIVGRYFVEQGFGMVVPDDSRLQHEIVIPP
ESTNGARMGQVVVVELTQRPRRKMNPVGKIVEVLGEHMAPGMEIEMALRTFDIPHQWPNG
VTKQVEKLTDQVPDEAKEGRIDLRQLPLVTIDGEDARDFDDAVYCEPLDDGGWQLWVAIA
DVSHYVRTGSALDDEAQQRGNSVYFPDQVIPMLPEVLSNGLCSLNPEVDRLCMVCEMTIS
ANGKLEEFQFYEAVMNSHARLTYTKVWNILQGDKELHQRYEPHVPHLRNLHDLYRALKKA
RAKRGAIEFETQEVKFVFNAQRKIENIVPLVRNDAHKLIEECMIMANVSAALTLEKHEAP
ALYRVHDKPDADRLTAFTSYLSEIGIPHAIVEDAEPAAFTDVVLKTRGRVDEELIQTMLL
RSMKQAVYDGENVGHFGLALEAYAHFTSPIRRYPDLVVHRALKGIIAKQKGKKAVSGAKN
YTVEEIEQLGEQCSMTERRADDATRDVADWLKCEFMLDHVGDTFEGVVSSVTNFGLFIRL
TEYHIDGLVHITSLDDDYYHYDEVKQALVGESGHRQFRLGDTVEVTVAAVNLDERKIDLL
LDKSMLRSTKGKKVKVKTAKKSSDKPTRFDNKPRSGKDSRSDKKGSKGKGGSNSPSRSGG
KSSSRGSAKGGSSGKTLSLNKRGKR
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgatccgcattatcagcgcgagaaagagaagtacgacaacccggtagcaagc
cgcgaatatttaatgagtttactaaaagaacacgacaagcctttgtcgtttcttgatatt
tgtaacttggtgaacgcgttcgacgaagaagcccgaataggtatacagcgccgcttacgc
gccatggagcgcgaagggcaagtacagttcaccaaacagaaaaaatacatacttcaaaac
cgtgatgaaatcataaaaggccgcattattggccaccgagatggttacggctttctgcgt
cctgaagataaaagtggtgacttattcataagtgccgggcaaatgaatttgtttttacac
gatgacgtggttgaagcgcgcattagcggcaccgaccgtcgcggtagaaaagaagccttt
attacccaagttatcgagccaagaagcgagccaatagtcgggcgctatttcgtagagcaa
ggttttggcatggttgtgccagatgatagccgccttcagcatgaaattgttattccgcca
gaaagtaccaacggtgcgcgcatggggcaggtggttgtggtagaacttacccaacgcccc
cgccgtaaaatgaaccccgtgggaaaaattgttgaagtacttggtgagcacatggcacca
ggtatggaaatcgaaatggctcttcgcacttttgatattccgcatcagtggccaaacggc
gtaaccaagcaggtggaaaaactcaccgatcaggtgccagatgaagccaaagaagggcgt
atcgatttacgccagcttcctcttgttaccattgatggtgaagacgcccgcgattttgac
gatgcggtttattgcgagccactcgatgacggcggctggcagctctgggtagccattgcg
gatgtaagccattacgtaagaacgggctctgcccttgatgatgaagcgcaacagcgcgga
aactcagtgtatttccccgaccaagttatccctatgttacctgaggtgttgtcgaacgga
ctgtgttcactgaaccctgaagtcgaccggctttgtatggtgtgtgaaatgaccatcagc
gcaaatggtaagctagaagagtttcagttttacgaagcggtaatgaattcgcacgcccgg
ttaacctacaccaaagtgtggaatattcttcaaggcgacaaagagcttcatcagcgttac
gagccacatgtacctcatcttcgcaatttgcacgacctttatcgcgcgcttaaaaaagcc
cgagccaaacgcggggctattgagtttgaaacccaagaagtgaagtttgtattcaatgcc
cagcgcaagattgaaaatattgtgccgctggtgcgtaacgacgcgcacaagcttattgaa
gagtgcatgatcatggcaaacgtgagtgcggctcttacgcttgaaaagcatgaggcgcca
gcgctatatcgtgtgcacgacaaaccagacgccgacaggcttaccgcttttaccagctac
ttaagtgaaattggtatccctcatgccattgtagaagatgccgagccagccgcatttacc
gatgtagtactaaaaacacgcgggcgggtagacgaagagcttatacaaaccatgctgctt
cgctctatgaagcaagcggtgtacgacggtgaaaacgtagggcactttggtttggccctc
gaagcttatgctcactttacctcgcctattcgtcgctaccctgatttagtggtgcatcgc
gcgttaaaaggcatcattgctaagcagaaaggtaaaaaagcggtaagcggcgctaaaaac
tacacggtagaagaaattgaacagctcggcgagcagtgttctatgaccgagcgccgcgcc
gacgatgcgactcgcgatgtggccgactggctcaagtgcgagtttatgttagatcacgta
ggcgacacctttgaaggagtagtcagctcggtcactaatttcggactattcattcgctta
acggaataccatatcgacgggttagtgcatattacgtcactcgatgacgactactatcat
tacgacgaagtaaaacaggccttagtaggcgagtcgggacaccgtcagttcagactgggc
gacacagtcgaggtaaccgttgcggcagtaaaccttgatgaaagaaagattgatttatta
ctcgataagtctatgctgcgcagcactaaaggtaagaaggtaaaagtgaagacagctaaa
aagtcttcagacaaacctactcgctttgataataaaccccgctctggtaaagactcccgt
tctgataagaaggggagcaaaggtaaaggcggttcaaattcgcccagtcgaagcggtgga
aaatcgtcgagtcgcggcagcgcaaaaggcggtagcagcggcaaaacactgtcattgaat
aaaagaggtaagcgttaa
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