KEGG   Alteromonas mediterranea UM4b: I636_17930
Entry
I636_17930        CDS       T02723                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
amad  Alteromonas mediterranea UM4b
Pathway
amad02024  Quorum sensing
amad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I636_17930
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    I636_17930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amad03019]
    I636_17930
   03036 Chromosome and associated proteins [BR:amad03036]
    I636_17930
Messenger RNA biogenesis [BR:amad03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     I636_17930
Chromosome and associated proteins [BR:amad03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    I636_17930
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AGQ03410
LinkDB
Position
complement(4061684..4061932)
AA seq 82 aa
MAKGQSLQDPFLNALRKERIPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARAITMPSAGDSENTKGE
NT seq 249 nt   +upstreamnt  +downstreamnt
atggctaaagggcaatctttacaagacccattcttaaacgctttgcgtaaggaacgtata
ccagtatcaatttatctggtaaacggtatcaaacttcaggggcaggttgagtcattcgac
cagttcgttattctactgaagaacacagtaagccaaatggtgtataagcacgcaatttct
actgttgttccagcacgcgctatcacaatgccaagcgcaggagattctgaaaatactaaa
ggtgaataa

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