Alteromonas mediterranea U7: I876_04875
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Entry
I876_04875 CDS
T02721
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
amae
Alteromonas mediterranea U7
Pathway
amae03030
DNA replication
amae03430
Mismatch repair
amae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I876_04875
03430 Mismatch repair
I876_04875
03440 Homologous recombination
I876_04875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amae03032
]
I876_04875
03400 DNA repair and recombination proteins [BR:
amae03400
]
I876_04875
Enzymes [BR:
amae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
I876_04875
DNA replication proteins [BR:
amae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
I876_04875
DNA repair and recombination proteins [BR:
amae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
I876_04875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGP88856
LinkDB
All DBs
Position
1130637..1134101
Genome browser
AA seq
1154 aa
AA seq
DB search
MSSPFIHLRVHSDFSMMDGLNKVKPILGKVAALEMPAVAITDQMNMCGLVKFYSEAHNLG
IKPIIGTDFWVTNEAFGDEPFRLTLLAMNNEGYKNITILISKAYLRGHLAHRAVIEQAWL
AEHAEGVIILSGAQHGDVGVGLMKNNAKLLDSALAFYESYFPDRFYLELIRTGRQGEEDY
LHHAVELAEQRGLPVVATNEVCFIDREGFEAHEIRVCIHDGYTLDDNRRPKRYSEQQYLR
TSEEMVELFSDIPEAIENTVEIAKRCNVTVRLNEYFLPQFPTGGMTTEDFLVKVSEEGLE
ERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVMEFIQWSKDNGIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEL
YGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFKAEPQL
PEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDFSPLYCDDEGNNPVTQF
DKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDISAIPLEDPKSFRTLQNAET
TAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD
AEYQHECLQEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMAKQRG
TFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKVHYPAEFMAA
VMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVDSKGRIVYGIGAIKGVGEGP
IEAIIEARETQGAFKDLFDFCAKVDIKRVNKRVLEKLVLAGAMDNLGPHRATLMATLPEA
LAAAGQHAKAESFGQSDMFGLLTTEPEEVQQAFADVPEWPEKVWLEGEKDTLGLYLTGHP
INQYADELRYYTDGRLVDLKPTNKDQLASAVGLVLGVRVMTNKRGRRWAIVTLDDKSARM
DVRFFPDMYEQFESLLETDRILLIKGQVSFDDFSGGNTITARDVMDIVQAREKNARALAI
NVDTQRLEPKIMSQMQSILQAFNGGSCPVQLAVTHPDVEVTLACGAKWYVTPEDQLLHDL
KQCLGDKAVSILYH
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgccatttattcatttacgtgttcacagcgacttttcgatgatggacggcctg
aataaggttaagcctattctaggtaaagttgccgcccttgaaatgccagcggtggcgata
accgatcaaatgaatatgtgcggtttggttaagttctattccgaagcacataatctggga
ataaagcccatcattggtaccgacttttgggttaccaatgaagcgtttggtgatgagccg
tttaggcttacgcttttggcgatgaacaatgaaggttataagaatatcaccattcttatt
tctaaagcgtaccttcgcggacatttagcgcaccgggctgttatcgagcaagcatggcta
gccgaacacgcagagggagtaatcatactctctggcgcacaacacggcgacgtgggcgtg
gggttaatgaagaataacgctaagcttttagacagtgccttagcattttatgagtcttac
ttccccgatcgattttacctcgagttaataagaaccggcagacagggtgaagaggactac
ttgcaccatgcggtagagctcgccgaacagcgcggtttgcccgtggtcgccaccaacgag
gtgtgcttcattgaccgtgaaggtttcgaggcgcatgaaatacgcgtatgtattcatgat
ggttacacgttggacgataaccgtcggcccaagcgttatagcgaacagcagtacctgcgc
acgagtgaagaaatggttgagctatttagcgatattccagaagccattgaaaatacggtt
gaaatagcaaagcgctgtaacgttacggtacgtcttaacgaatacttccttccccagttc
ccaacaggtggcatgaccactgaagacttcttggttaaagtgtctgaagaagggttggaa
gagcgtctagaatttcttttccccgatgaggaagttcgcaaagctaaacgcccagagtac
gatgaccgacttcgcattgagcttgaagtaattaaccaaatgggtttcccaggctacttc
cttatcgtaatggagttcattcagtggagtaaggataacggtattccggtagggccagga
cggggctccggtgcaggttcattggtggcgtacgcgcttaaaattaccgacttagatccg
ctagaattcgacttgctattcgaacgtttcttgaacccagagcgtgtatctatgcccgac
ttcgacgtcgacttctgtatggatagacgagatgaagtaattgatcacgttgccgagctc
tacgggcgacaggcggtatctcagatcattacctttggtactatggcggcaaaagcggta
gtacgtgacgtgggtcgagtattgggtcacccatatggttttgtagacaggatttcaaag
ctcataccgccagaccctggtatgacgctagaaaaagcgtttaaagctgagccacagctg
ccagaagtttatgaaagcgatgaggaagtgaaagaccttatcgatatggcgcgtattctt
gaaggggttacccgaaatgccggtaagcacgccggtggtgttgttatcgcgccaaccacg
attactgatttctcgccgctatattgtgatgacgaagggaataacccggtaacccagttc
gataagaacgacgttgaaacggcaggcttggtaaaattcgacttcttaggtcttcgtaca
ctgacgatcattcagtgggcgatagatatgatcaaagagggcaagaacgttgatgtagat
atcagcgctattccgcttgaagatcctaagagtttcagaacccttcaaaacgccgaaacc
actgcagtattccagttggaatcccgcggtatgaaagagctaattaaacgccttaagccg
gactgctttgaagatatcatcgcattggtggctctattccgcccaggaccactgcagtca
ggcatggtagataactttatcgaccgtaagcacggacgtgaagaaatttcttacccagac
gctgaatatcagcacgaatgccttcaagaaatactagaacctacctacggcattatcttg
tatcaggaacaggtaatgcagattgctcaggaaatggcaggttactcactcggcggcgct
gacttacttcgccgtgcaatgggtaagaaaaaacctgaagaaatggcgaagcagcgcggt
accttcgctgaaggtgctaagggcaataatattgaccctgatctggccatgaaaatcttc
gacttggtagaaaaattcgccggttacgggtttaacaaatctcactcggcagcatacgcg
ttggtgtcttaccaaacgctgtggctaaaagtgcattatccggctgaatttatggctgcg
gtaatgtcggcggatatggataacaccgataaaatcgtaacccttgtcgatgaatgtgaa
cgcatgggtattgagatactgccgccagatttaaacgcaggcaaatacaaatttaccgtt
gatagcaaaggtcgcattgtttatggcattggtgcgattaaaggggtaggtgaaggtccg
attgaagcgattattgaagcgcgcgagacccaaggtgcgtttaaagatcttttcgacttc
tgcgcgaaggttgatattaaacgtgttaacaaacgtgtactcgaaaaattagtgcttgct
ggtgcgatggataatttaggcccccaccgggctacgcttatggcgacgcttcccgaagcg
cttgcagcggcggggcagcatgccaaggccgagtcgtttggtcagtcagacatgtttggc
ctattaaccaccgagcctgaagaagtacagcaggcctttgccgacgtacctgagtggcct
gagaaagtgtggcttgaaggcgagaaagacacacttggcttgtatttaacaggccatcct
atcaatcagtatgctgacgagcttcgctactataccgacggtcgtctggtcgacttaaaa
cctaccaataaagaccagcttgctagtgcagttggcttggtactgggcgttcgtgttatg
acaaacaaacgagggcgccgctgggcaatagtgacactggatgataagagtgccagaatg
gacgtgcgtttctttccagacatgtacgaacagttcgaaagtttgctagaaactgacaga
atattgctcataaagggacaggtcagctttgatgatttctctgggggcaatacaatcacc
gcccgtgatgtaatggacattgttcaggcacgagagaaaaacgcgagagcgctggcgata
aatgttgatacccagcggcttgaaccgaaaataatgagtcagatgcaatctatcctgcag
gcatttaacggtggaagttgtcctgttcagttagcggtgacccatccagacgtagaagta
accttagcgtgtggagcaaagtggtacgttacccctgaagatcaacttttacacgatctc
aagcaatgtttgggagacaaagccgtttcaattctctaccattaa
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