Alteromonas mediterranea U7: I876_08235
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Entry
I876_08235 CDS
T02721
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amae
Alteromonas mediterranea U7
Pathway
amae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I876_08235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amae03019
]
I876_08235
03009 Ribosome biogenesis [BR:
amae03009
]
I876_08235
Enzymes [BR:
amae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I876_08235
Messenger RNA biogenesis [BR:
amae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I876_08235
Ribosome biogenesis [BR:
amae03009
]
Prokaryotic type
rRNA processing factors
I876_08235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGP89510
LinkDB
All DBs
Position
complement(1889048..1892470)
Genome browser
AA seq
1140 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPDGMGLIVRTAGVGKSYEEL
EWDLKVLLKHWEAISEVAEGREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFASRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVLRRRPDDVVSEASYDVELMPAVEAETETTTTTPVKREEPALKGLVAPTAAPVVAPK
EEPAKKAEDVPSLFARIGKWISDLFGSEGEEESNKDKKHQSTDTNKNRNNRSRNNDDRRR
KPRNKNQRRNNSSQNRDQNKDQGRDEQQDNRKARGDQRQDQRQDQDDKRNNKGRKPRKAQ
QPRDEQQKPKHEKQEGEQQENQAQKKREVAERRKRRDKRRSVRVKKDDNTPSTVEQTEAQ
AVPAQNGNEAVKASQQDAKAQSKPKADAKPQKAVKADEVEAQSGNTAAQKQETKKPAKKP
VDKASEEKSAREADKVEGSQTDSADTTEANSEENGQKREGRGRSRRSPRHVRAAGQRRKK
ESQQVDEAETQAKQPGELEPQEPETSTVATQTEAPAVEETQAQEPGKLAPSEEQPASNQE
KQDTANLDVEAVQDELQFDVEPSAGKEPSAGKKPLAKEQPSAEEQPSAKEQASAEETPVG
GNTTSADENSVAKAAPLSQEEAVAKAQASTDSSTSSDEVASEEAAPSEVKATSDNASEQA
AEESASASPEQVEINLAETTEAAVETKANAPVAKAPAKQQVSETSSLAASGKGKRGASHP
MALPAEVNDAFVDVALTAKADNERPALAVSGKTAAMAQAGSRASAPTTLPKSVDADAVAQ
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaactcaacaagaagagttgcgcgttgccctagtcgat
gggcaacggttgtacgatttagatatagagagtccaggacacgaacaaaagaaagcaaat
atctacaagggtaaaattacccgtgttgaacccagcttagaagcagcgtttgttgactac
ggcgcagagcgtcatggattcctaccccttaaagaaatagcccgcacttacttccctaaa
ggttacaaattcgaaggccgccctaacatcaaagatgtgattaaagaaggccaagaagtt
atcatccaaattgataaagaagagcgcggccaaaaaggcgcggcactaaccacattttta
tcgcttgcgggaagttacttagtgcttatgccaaacaaccctcgtgctggcggtatttct
cgccgaattgagggtgatgagcgcactgagcttaaagagtcactaagcaaacttgacctt
ccagatggcatgggccttattgttcgtaccgctggtgtaggtaaatcttacgaagaatta
gagtgggatttaaaagttcttcttaagcactgggaagcaatttcagaggttgctgaaggt
cgtgaagcaccgtttttaattcaccaagaaagcaacgttattgttcgcgctatccgcgac
tatctacgtcgtgatattggcgagattcttatcgacaagaccagcatctacgagcaggca
ctacagcatattcagctagtccgtcctgatttcgcaagccgtgtaaagctttatcgcggt
gaagttccattatttagtcactatcaaattgaaagccaaatcgagtcagccttccaacgt
gaagttcgcctgccgtctggtggttcaattgttattgacccaacggaagcgttgacttcc
attgatatcaactctgcccgtgctactaagggtggcgatatcgaagaaacagcccttaac
actaacctagaagcggctgatgaaattgcccgtcaattacgccttcgagatctaggtggt
cttgttgttatcgacttcattgacatgacccccgttcgtcatcagcgtgaagttgaaaac
cgcatgaaagatgcggtaagaagcgacagagcgcgtgtacagttagggcgtatttcacgc
tttggtctattagaaatgtcacgccagcgcctgcgcccttctctcggtgagtctgcgcat
cacgtgtgccctcgctgttcaggccacggtactattcgcgggactgagtctttggcgctg
tctattcttcgcatactagaagaagaaagtattaaagaaaatacagggcaaattgaagcg
caattgcctgtacccgtagcaacctacttactgaacgaaaaacgtaagtctattcagcta
ctagaaaaacgtcacggtgtagatttgctgctcattccaaacgcgaacctagacacaccg
cactaccaagtattgcgtcgtcgtcctgacgatgtggtatctgaagctagctacgacgtt
gagttaatgcctgcggtagaagcagaaactgaaacgacgactacgacgccagttaagcgc
gaagaacctgcgcttaagggcctagttgcaccaacggctgcaccggttgttgcacctaaa
gaagagccagcgaagaaagctgaagacgtgccttcattatttgcgcgtattggaaagtgg
atcagcgacttgtttggctctgaaggtgaagaagagagcaacaaagacaagaaacatcaa
tctactgatacaaataagaatagaaacaatcgcagccgcaataacgacgaccgtcgtcgt
aagccgcgcaataaaaaccagcgtcgtaataactcatctcaaaacagagaccagaataaa
gaccaaggtcgtgacgagcagcaggataatcgcaaagcacgcggtgatcagcgccaagac
cagcgtcaagatcaagacgacaagcgcaacaacaaaggtcgcaagccacgtaaagcgcag
cagcctcgcgacgagcagcaaaagcctaaacacgagaagcaagaaggcgaacagcaagaa
aaccaagcgcagaagaagcgtgaagttgctgaacgcagaaagcgccgtgacaagcgtcgt
agcgttcgtgtaaagaaagatgacaatacgccaagcactgtagagcaaacagaagcgcaa
gcggtacctgcccagaacggcaacgaggctgtaaaagcatctcaacaggatgcaaaagcg
caaagtaagccgaaagctgacgcaaagcctcaaaaggcggtgaaagccgatgaggtagaa
gcacagtcaggcaatacggctgctcagaaacaagaaacgaaaaaaccagctaaaaagcct
gtagacaaagcgtctgaagaaaaatctgcacgagaagccgacaaggttgaaggtagccaa
acagatagcgctgacactacagaggcgaacagcgaagaaaacgggcaaaaacgcgaagga
cgtggtcgttcgcgccgttctcctcgtcacgtacgtgcagctggtcagcgtcgtaagaaa
gagtctcagcaagttgatgaagctgaaacacaagcgaagcaacctggcgaacttgagcct
caagagccagagacaagcacagtagctacgcaaacagaagcgccggctgttgaagaaact
caagcacaggagcccggaaagctagcgccatctgaagagcaaccagcatctaatcaagaa
aagcaagacaccgcgaaccttgacgttgaagcggttcaagacgaacttcagtttgatgta
gagccttcagcgggtaaggagccttcagcgggtaagaagcctttagcgaaagaacagcct
tcagcggaagaacagccttcagcgaaagaacaagcttcagcagaagagactcctgtagga
ggcaatacaacttcagctgatgagaactctgtcgctaaagcagcccctctttcacaagaa
gaggcggttgcaaaagcgcaggcttctaccgatagcagcacctcatctgatgaagtagcg
tctgaagaggctgccccttctgaagtgaaagcgacgtctgacaacgcgtcagaacaagcc
gcagaggaaagcgcttcagcatcgccagagcaggttgaaatcaaccttgcagaaacaacc
gaagcagcagtagaaactaaagcgaacgcaccggtagcgaaagcgcctgctaagcaacag
gtttcagaaacgtcaagcttagctgcaagcggtaagggtaagcgcggcgcatctcatccg
atggcgctacctgctgaagttaacgacgcctttgtagatgttgcgttaacggctaaagcc
gataacgaacgtccagcgctggccgtttcgggtaaaacagccgcaatggctcaggcaggc
tctcgagcatcagcgccaacaacactacctaagtcggttgacgctgacgcagtagcgcaa
tag
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