Alteromonas mediterranea MED64: I533_00880
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Entry
I533_00880 CDS
T02958
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amag
Alteromonas mediterranea MED64
Pathway
amag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I533_00880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amag03019
]
I533_00880
03400 DNA repair and recombination proteins [BR:
amag03400
]
I533_00880
Enzymes [BR:
amag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I533_00880
Messenger RNA biogenesis [BR:
amag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I533_00880
DNA repair and recombination proteins [BR:
amag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I533_00880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CRS1_YhbY
PB4_spike
Motif
Other DBs
NCBI-ProteinID:
AGP80173
LinkDB
All DBs
Position
complement(190945..192804)
Genome browser
AA seq
619 aa
AA seq
DB search
MTTAIAPSESSSNTQSAKTPERILKDVFGYDAFRDGQGEVIHRVCEGKDALVLLPTGGGK
SLCYQIPALVRDGTAIVVSPLISLMQDQVEQLKALGVKAAYLNSTLEADEQAGINDALQA
GKLDLLYVSPERLMQYYFQQSLANADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFP
SIPVIGLTATADTATQADILTQLNLHAPLVYKGSFDRPNIRYRVMSKYKAFDQVVAYVKQ
QEGSGIIYCNSRAKVDDLHAKLFRQGFRCAAYHAGMDSDERELVQRQFLNDKIDIVVATV
AFGMGINKSNVRYVVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQ
GEIAERNQIELQKFAAMEAFSEAQTCRRQVLLNYFSQFSDSACGNCDICLDPPKMIDGLV
IAQKVLSCVLRLSQQASSQYVIDVLRGKQLRRLQEAGHHQLSTYGIGKDKSDSYWHNIIN
QLVHKGLIRVDITAHAALRLTEAARPVLKGEVDVQLAVPRLEFKPDKKKAKQAPANYDRT
LFTRLKHLRKVLAEENEVPPYVVFSDATLVDMACKLPTTRNTMLDVSGVGQTKLERYGEA
FIQLIDDYINREHYRTYKR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgcaattgctccatctgaatcaagctccaacacgcaaagtgcaaaaacacca
gaacgcattttaaaagatgtcttcggttacgacgcctttcgcgacggtcagggcgaagtc
attcaccgcgtatgtgaaggtaaagacgcactcgtgctgctgcctactggtggcggtaaa
tcgctgtgttatcaaattcctgcgctggtgcgagatgggacagccattgttgtgtcgccg
cttatatcattgatgcaagaccaggtagagcagctgaaggccttaggtgtaaaagcagct
tacctaaactcgacgttagaagcagatgagcaagcgggtattaacgacgccttgcaggca
ggaaagctagacctgctttatgtgtcacctgagcgtttgatgcagtactattttcagcag
tcgcttgccaatgccgatattgcgctttttgctatcgatgaggcgcactgtgtgtctcat
tgggggcacgactttaggcaagactatcgcgcccttggccaaattaaatctcgctttccc
tctattcccgtaatcgggctaaccgccaccgcagatacggcgacgcaagctgacatactt
acccagcttaacctgcacgcccctttggtttacaaaggtagtttcgatagacccaacata
cgctatcgggtgatgagcaagtacaaggcattcgaccaagtggttgcttatgttaagcag
caggaaggcagcggtattatttactgcaacagccgggcaaaagtagacgaccttcacgcg
aagctattcagacaaggctttcgttgtgcggcctatcacgcagggatggatagcgacgag
agagagcttgttcagcgccagtttctcaatgacaaaatcgatatcgttgtagccacggtg
gcctttggcatgggcattaacaaatctaacgtgcgctatgtggtgcatcacgatgtgccg
cgaagcgtagaaagctactatcaagaaacaggccgcgctgggcgagacggtctggaatct
gaagccttattattgtttgatgaaaaagacgctgcccgcgtaaagcagtggatagagcaa
ggtgagattgccgagcgcaaccaaatagaattgcagaaattcgcagcaatggaagctttc
tctgaagcccaaacctgccgtaggcaagtcttgctcaactacttttctcagtttagtgac
agcgcctgtggcaattgtgatatttgcctagacccgccaaagatgattgacggtttggtt
atcgctcaaaaagtactgtcttgtgtactgcggctttcgcagcaggcgtcaagccaatac
gtcatcgatgtgctgcgcggaaagcagctgaggcgacttcaagaagccgggcaccaccag
ctttctacctacggtataggtaaagataaatcagatagttattggcacaacattatcaat
cagcttgtgcacaaaggccttattcgtgtagatattaccgctcatgcggccttgcggtta
acagaagcggcccgcccagttcttaaaggcgaagtggacgttcagcttgctgtaccgcga
cttgagtttaaaccggataagaaaaaagcgaagcaagcgcctgccaactacgacagaacc
ttatttactcgtcttaagcacttacgcaaagtgttggcagaagagaatgaggtgccgccc
tacgtggtatttagtgacgcaaccttagttgatatggcgtgcaaactgcctaccacgcgc
aacactatgctagatgtgagcggtgtaggccaaaccaagctagagcgctacggcgaggcc
tttatccaacttatcgacgattatatcaaccgcgagcactatcgcacttataagcgctag
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