Alteromonas mediterranea MED64: I533_03020
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Entry
I533_03020 CDS
T02958
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amag
Alteromonas mediterranea MED64
Pathway
amag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I533_03020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amag03019
]
I533_03020
03009 Ribosome biogenesis [BR:
amag03009
]
I533_03020
Enzymes [BR:
amag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I533_03020
Messenger RNA biogenesis [BR:
amag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I533_03020
Ribosome biogenesis [BR:
amag03009
]
Prokaryotic type
rRNA helicases
I533_03020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGP80597
LinkDB
All DBs
Position
complement(662071..663831)
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AA seq
586 aa
AA seq
DB search
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEAFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQSARERTVEKLKQGQIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQHDSIESLMPIVEMIKEENEASPE
VLMAALLKIAQGDEPLILKETDRPDINSKPPRDSRERNSRDGRERKPKVPRGNRKPEEGM
QRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPDGMPKETRDTLS
GTRVAGQRLNIREWSDTPPKRDGRGSRSDKGDRAPRGNRENRKRKN
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagacctcaatttaccagaaccaatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagctgagagtattcctctt
ttacttgaaggacacgatttactcggtcaggcacagacagggacaggaaaaaccgctgcg
tttgccctgcccatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ttggccccaacccgtgaattagcaattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttcccgtatacggcggccagtcgtacgacaaccaaatt
cgccagcttaagcgcggcgtgcaagtggttgttggtacaccagggcgtatcatcgaccat
atcaagcgcaaaacactagacttaagcgaacttaagtatttagtgctagatgaagcagat
gaaatgcttcgcatgggctttatcgatgacgttgagctaattcttagccacgcgccagaa
gagcgccaaactgcgctgttctcggcaaccatgcctggcccaatcaagaagattacccag
cgctatttgaaagaccctaagcacgtcaaaattgcgtctaaggtaagcactgccagcacc
attcgccagcgctactgtcaaattgcgccgcatcacaaacttgaagcgttaacccgcatc
atggaagtggaagcgtttgacggtatgattattttcgtacgcacgaaaaccgctaccgtg
gaacttgccgataagctatctgcccgtggttacgatgtagaaccgctaaacggtgacatt
cctcaatctgcgcgagagcgtaccgttgagaagcttaagcaaggtcaaattgacatactt
gttgctacagacgttgtagctcgtggtctcgacgtagagcgtgttagccacgtaatcaac
tatgatatcccttacgacagcgagtcttacgtacaccgtattggccgtaccggtcgtgct
ggacgtcaaggtgatgcgattctatttatttcacatcgcgaaaagcgcttgttgttctct
atcgagaagacaactaagcagccaattgaagccatgccaattccttcaattagtgaaatt
aacgaaacgcgtttaagccgctttaagcaatcggttgctgaagcaacgcaacacgatagc
attgaatctttaatgcctattgttgagatgattaaagaagaaaacgaagcatcacctgaa
gtgttaatggcggcattgcttaaaattgcgcaaggcgacgaacctttaattcttaaagaa
accgaccgaccagacattaacagcaagcctccgcgcgatagccgcgaaagaaacagtcgt
gatggtcgtgagagaaagccgaaggtaccacgtggaaaccgcaagccagaagaaggcatg
cagcgcttccgcatcgaagtgggccatgttcacggtgctaagcctggtaatatcgtcggc
gcgattgcgaatgaagcgaatatcaactctaagcacattggtgctatcgagatttatgat
aacttcagtactgttgatttacctgacggtatgccaaaagaaacccgtgacaccctttcg
ggcacacgcgtagcaggtcagcgattgaacattcgtgaatggtcagacacgccacctaag
cgcgacggtcgtggaagccgcagtgacaaaggtgatcgtgcacctagaggcaaccgtgaa
aaccgtaaacgtaagaactaa
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