Alteromonas mediterranea MED64: I533_04095
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Entry
I533_04095 CDS
T02958
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
amag
Alteromonas mediterranea MED64
Brite
KEGG Orthology (KO) [BR:
amag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amag03400
]
I533_04095
DNA repair and recombination proteins [BR:
amag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I533_04095
Archaeal homologous recombinant proteins
I533_04095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_21
AAA_29
ABC_tran
nSTAND3
NTPase_1
SMC_N
AAA_22
AAA_16
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AGP80810
LinkDB
All DBs
Position
909401..913126
Genome browser
AA seq
1241 aa
AA seq
DB search
MRILTLRLKNLNALKGEWKIDFTQSPFIDNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LGPISTSNNDIMTRGTAECLAEVEFDIKGKAYRAFWSMRRARGKVDGNLQSADVELAEVE
SGDVLATQVRPKNEEIEKLTGLNFARFTKSMMLSQGDFAAFLNANEGDRAELLEELTGTE
IYGQISQAVHQQFSEAKQKKKEFAIKLEGVTLLSNEQITQLEEEQDGINGQVAAFNQTLT
ELQQQQQWQQSFNTNALALKEAKEAQLAANNAIDEAKQELDVLTHSEPAEKLRLPFLQRN
GLQQDVSGYKEKLNEKAAQLPELKTQKEQLSSEVTNAERALLQTKQQSSELEKRINEQVV
PLDNNIAQSTAAQQKANDSAAQFTRSINALTKKRTEIENASADNKKKLGELEAYLNKNHS
LSGMAEFISGWSETARHIESEQKQIATLKQSAEEHRDALSSIDEAITQTNQALKTLTQTF
DNATANVATCEEALNAALSNANKNSASSKTSLQQERDTKLHHWDNLIQIGHIQQQYLALE
QDKVSLSAQKEDLSKKLAQQQSDRQALVDAYKQTRSNLKDIEVLIALDAEVAHLRAQLKS
GEPCPVCGANEHTTASVAIDIPETVQKRDSLKEQLDDIEQQGAQAKESVTHTELTLTQVN
KQLDQTSAKRDALVEKWKQFSSVLSADISSFEKVDINTSQSVAQFTEQFKTRLDDISAQL
TRIEQCEQALNAAVQSKNEAQQALQAKQSELAVSLQRRETLEKQLTERNAEVENKTKGVN
DSIATLRETMTAHGAEVHNLPIEGIATWLNEKAEALKTYKHNHQLHTNLNEELQEVSRTL
LVLNRDIESAETQLKSVSEELMQLDSTLIELRKSRIAVFPEGNISEVRSKASAAQVQAEQ
KLSECQSRLHQTDTILSRLEAEIAQLNEQIREKEQALTEATENFNRQLANSPFADEQAFS
NALLDEETRNKLLELQKQLTQQKQQADLKLENALATQQSLTARDHAEQWQRELEEHGMQW
VENQITEQAQQKDALLSTLGQIKQQLNANNEAREKQRTLVEEMAAFETYYDDITYLHSLI
GSASGDKFRRFAQGLTLDNLVQVANQQLDKLHGRYQLIRKENDGLGLSVLDTWQGDVVRD
TKTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDVALDALDNLNAS
GKMIGVISHIEAMKERIPTQLKVIKRNGVGLSALEKPYAVG
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgagaatattgaccttacgccttaaaaatttaaatgcccttaaaggggagtggaagata
gatttcactcagtcaccctttatcgacaacggcttgtttgccattactggcccaaccggt
gcgggtaaaaccaccctgctcgatgcaatatgtttagctttatatcaccaaacgcctcga
cttgggcctatatcaacgtcgaacaacgacattatgactcgcggtacagcggagtgtttg
gcggaagttgagtttgatattaagggtaaagcgtaccgtgcgttttggagcatgcgccgc
gccagaggaaaagttgacggtaatctgcaaagtgccgatgttgagctggctgaagttgaa
agtggcgatgtgctagcaacccaggttcgccctaaaaatgaagagatagaaaagctcact
ggtctgaactttgcgcgcttcacaaaatctatgatgttgtcgcagggcgactttgctgcc
tttctaaatgccaatgaaggcgacagggctgagttacttgaagaactaactggtactgaa
atctatgggcaaatatcacaagcagtacatcagcaatttagcgaggctaaacaaaagaaa
aaagaattcgcgataaagcttgaaggggtaacgttacttagcaatgagcaaattacccag
ttggaagaagagcaagacggtattaatggtcaagttgcggcgtttaaccaaacacttact
gaactacaacagcaacagcaatggcaacaatcattcaacaccaatgcactcgcgcttaaa
gaggcgaaagaagcacagcttgctgcgaataatgcgattgatgaggcgaaacaagaactt
gatgtgctaactcacagtgagcccgccgaaaagcttcgcctcccttttttgcagcgaaac
gggcttcagcaagacgtatcgggctacaaagaaaagctcaatgaaaaagcggctcagctt
cctgaattaaaaacgcaaaaagaacagcttagctcggaagtgaccaatgctgaacgagcg
ctacttcaaactaagcagcaaagcagtgaacttgaaaagcgcataaacgagcaggtcgtt
ccgttagataataatatagcgcagagtacagccgcccaacaaaaagcaaatgacagcgct
gcgcagtttacgcgctccataaatgcgctaactaaaaagcgtacagaaatagaaaatgcg
tcagccgataacaagaaaaaactgggtgaattagaagcctacttaaataaaaaccactca
ctcagcggtatggccgagtttatcagcggttggagtgaaactgcgcggcatattgagagc
gaacagaagcaaatagcgacacttaaacaaagtgccgaagagcaccgcgacgcgctttcc
tcaattgatgaagctattacacaaacgaatcaggcgctgaaaacattaacgcaaactttt
gataatgcgaccgccaacgtcgccacttgtgaagaggcgttaaatgctgcgctttctaac
gccaataaaaatagcgcaagcagtaaaacaagtcttcaacaagagcgggataccaagctt
catcactgggacaacctgattcagataggtcatattcaacagcaatatttggcactagag
caagacaaagtatcgctgagtgcacagaaggaagacttatcgaaaaaactagcgcagcag
caatctgaccgacaagccttggttgacgcctacaaacaaacacgcagtaatttaaaagac
atagaggtgctgatcgccctagatgctgaagtggcacacctgcgcgcccagctaaaaagt
ggcgagccatgtccggtatgtggagctaacgagcacactacggctagcgtggcgattgat
atacctgaaactgtacaaaagcgtgacagcttaaaagagcagttagatgatattgagcaa
caaggagcacaggcaaaagaaagcgttacacacactgagttaacccttacccaggttaat
aagcagctagaccaaacaagcgcaaaacgcgatgcgttggtagaaaagtggaagcagttt
tcaagcgtacttagcgctgatatatcaagctttgaaaaagtcgacattaatacatcacaa
agtgtcgcccaatttaccgagcagtttaaaacccgtcttgatgacattagtgcccagtta
acgcgcatagagcaatgcgaacaagccctaaatgccgcagtgcagagcaaaaatgaagca
caacaagcgttgcaagccaaacagtcagaacttgcagtttctttgcagcggcgcgaaaca
ttggaaaagcaactcaccgaacgcaacgcagaagtagagaacaaaactaaaggggttaac
gacagcattgcaacacttcgtgagactatgacggcgcacggtgctgaagttcacaacctg
cctattgaaggaattgctacgtggttaaatgaaaaagccgaagcgctcaaaacttataaa
cacaatcatcaactgcacaccaaccttaatgaagagctacaagaggtgagtcgtaccttg
cttgtactaaaccgtgatattgaaagtgcagaaacacagcttaaaagcgtatctgaagaa
ctcatgcagctagatagcacgctgatagaactgcgcaaatcacgtatagcggtattccct
gaaggtaatatttcagaagtaaggagtaaagcaagcgccgcccaagtacaggctgagcaa
aaattgagtgagtgccaatctcgcctgcaccaaacggatactattttgtctcggttagaa
gcagaaattgcccagcttaatgagcaaatacgcgagaaagagcaggcacttacagaggcg
actgagaactttaatcgccagctagcaaacagcccatttgccgatgagcaagcgtttagc
aatgcgctactagatgaagaaacccgtaataagttgcttgagctgcaaaagcaattaacg
cagcaaaaacaacaggctgaccttaaactagaaaacgcgctagcgacacagcaatcgcta
acagcgcgtgaccatgcagagcagtggcagcgcgagctagaagaacatggtatgcagtgg
gttgaaaatcaaattaccgagcaagcgcaacaaaaagacgctttgttatccaccctaggg
caaattaaacagcagttaaacgccaataatgaagcccgtgaaaagcaaaggacgctggta
gaagagatggccgcgttcgaaacctattacgatgatattacttacctgcattcgttgatt
ggttcggcaagcggtgacaaattcagacgttttgcacaagggcttacgctggacaacctt
gtccaagttgctaaccagcagctagataagttgcacggtcgctatcagcttattcgcaaa
gaaaacgacgggctaggcttaagtgttttagatacttggcaaggagacgtggtacgcgat
accaaaacgctgtcgggtggagaaagcttcttagtgagccttgcgctggcattggcgtta
tctgacctggtaagtcacaaaaccagtatcgattcactatttttagatgaaggctttgga
acccttgatgctgaaaccttagatgtggccctcgatgcgctagacaacttaaatgccagt
ggaaaaatgattggcgtcataagccatatcgaggccatgaaagagcgaattcctactcaa
cttaaagtaattaaacgcaacggtgtgggcttaagtgcactagaaaagccttatgcggtg
gggtag
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