Alteromonas mediterranea MED64: I533_08225
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Entry
I533_08225 CDS
T02958
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amag
Alteromonas mediterranea MED64
Brite
KEGG Orthology (KO) [BR:
amag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amag03032
]
I533_08225
03400 DNA repair and recombination proteins [BR:
amag03400
]
I533_08225
Enzymes [BR:
amag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I533_08225
DNA replication proteins [BR:
amag03032
]
Prokaryotic type
DNA Topoisomerases
I533_08225
DNA repair and recombination proteins [BR:
amag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I533_08225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Gp-FAR-1
Zn_ribbon_recom
Zn_ribbon_TFIIB
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AGP81621
LinkDB
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Position
1845750..1848410
Genome browser
AA seq
886 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTKALGKVEPKKPAKELKTLSEE
ARQEYLRRHEYLKLVDRMGVDPEKDWKAHYQVLQGKEKVVNELKKLAKDADTIYLATDLD
REGEAIAWHLQELLGKKDKTYQRVVFNEITKNAIQDAFSDPGELNISRVNAQQARRFLDR
VVGFMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWDVHADLTSQEKAA
LRMLVAKYQGNGFKPKNKAEADKALADLESAKYTVESRESKPTQSRPSAPFITSTLQQAA
STRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQEALDSARAYISDNFGNKYLPDSPI
RYGSKEGAQEAHEAIRPSNVNISAASLGDMERDAQRLYELIWRQFLACQMTPAKYDATTI
KVAAGDYELTAKGRVLKFDGWTRVQPQLRKKGDEELMLPDVQKGDVLDLKALDPKQHFTK
PVARFNEASLVKELEKRGIGRPSTYASIISTIQDRGYVRLENKRFYAEKMGEIVNDRLME
NFDDLMSYDFTANMEQHLDDIAEGNKDWKDVLNEFYSGFYGKLLNAEKDPEEGGMRLNQA
IPAGIECDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELE
TEALRSKKRCPKCGTAMDSYLVDETRKLHVCGNTPTCDGTLVEAGTFKIKGYDGPIIECD
KCSSDMELKNGRFGKYFGCTNEECKNTRKLLRNGEAAPPKEDPVDLPELPCEKSDAHFML
RDGASGIFLAAHNFPKSRETRAPKVEELARFRDRISPKFYYLADAPKTDPDGNPAIVRYS
RKTKQQYVMSENENGKATGWSAWYDDGKWQEQAAKKPAAKSKAKKK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcactggtcatagtcgagtcaccagccaaagcaaaaacgataaataaatat
cttggtaaagattttatcgtaaaaagttcggttggccatgtgcgagatcttccaacgaag
gcgttaggcaaagtagagcctaaaaaaccggctaaagaactcaaaactttaagcgaagaa
gcgcgtcaagaataccttcgacgtcatgaatatttgaagcttgtagacagaatgggtgtg
gatccagagaaagactggaaagcgcactatcaggtgctgcagggcaaagaaaaggtagtc
aacgaacttaaaaagctcgcaaaagacgccgacactatctatctcgcaacggatttggac
cgcgagggagaggccatcgcttggcatctgcaggagttgctgggtaaaaaagataaaacg
tatcagcgtgtggtgtttaatgaaattaccaaaaacgcgattcaagacgcgttttcagac
ccgggtgagctaaatatatctcgtgttaatgcacagcaagctcgccgtttcctagaccga
gttgtgggcttcatggtgtcgccactgctttggaaaaagattgcccgaggcctatctgca
ggacgtgttcaatcggtagcagtacgcttagtggtggagcgcgagcgagaaattaaagcg
tttgtgccggaagagttttgggatgtgcacgccgacctgaccagccaagaaaaagcggca
ctacggatgctggtggctaagtatcaaggcaacgggtttaagccaaaaaataaggcagaa
gccgacaaagcactggctgatttagaaagtgcgaaatacacggtagaaagccgcgaatcg
aagccaacgcaaagccgcccatcagcgccgtttatcacgtctacactgcagcaagcggca
agtacgcgacttggctttggtgttaagaaaaccatgatgatggcgcagcgtctttatgaa
gcgggttacatcacctatatgcgtaccgactcgacaaatttgagtcaagaagcgctagat
agtgctcgagcgtatatttccgataatttcggtaacaagtatttaccagattccccaatt
cgctacggcagcaaagaaggcgcgcaagaagcgcacgaagcgattcgcccgtctaatgtc
aatatcagcgctgctagtttaggtgatatggaacgtgacgctcagcgtctttacgagttg
atttggcgacaatttttggcctgtcaaatgacgccagcgaagtacgacgcaaccaccatc
aaagtggcggcgggtgattacgagctaaccgccaaaggccgtgtacttaagtttgacggt
tggacgcgcgtgcaaccacagcttcgcaaaaaaggcgatgaagaattaatgttgccagat
gtgcagaaaggcgatgtgcttgacttgaaagcacttgatcctaagcagcatttcacaaaa
ccagtggcacgatttaacgaagcgtctttggtaaaagagctggaaaaacgcggcattggc
cgcccgtcgacctacgcgagtattatctcaaccattcaagaccgcggctatgtacgttta
gagaacaagcgtttttatgccgagaaaatgggtgagatcgttaacgatcgtctaatggaa
aacttcgacgacttaatgagctacgactttacggccaacatggagcaacatctcgatgat
attgctgaaggcaacaaagactggaaagacgtactcaatgaattctacagtgggttttac
ggtaagcttctaaacgcagagaaagaccctgaagaaggcggtatgcgcctaaatcaggcg
ataccagcgggtattgagtgcgacaaatgcggccgtgaaatgaacgtaagaaccgcgtca
acgggtgttttcttaggttgttctggatataacttaccgcctaaagagcgctgcacgaat
actatgaacttaacgcctggcgatgaagtcgttaaggtcgatgacgaagaagagctagaa
accgaagcccttcgttctaaaaagcgttgccctaaatgtggtaccgccatggacagttac
ttggtagatgaaacccgtaagctacacgtttgtggtaatacacctacctgtgatggaacc
ttggttgaagcgggtacctttaagattaaaggctacgacggcccgattatcgaatgcgat
aagtgcagcagcgatatggagcttaaaaacggtcgattcggtaaatactttggctgtacc
aacgaagagtgtaagaatacccgtaagcttttacgaaacggcgaagctgcaccacctaaa
gaagacccagtagatttacctgagctaccgtgtgaaaaatctgatgctcactttatgcta
cgtgacggtgcgtcgggcatcttcttagcggcccacaacttccctaaatcgcgtgaaact
cgtgcgccgaaagtggaagaactggcacgctttagagatagaatttcgccaaaattctat
tatcttgcagatgcgccgaaaaccgatcctgatggaaaccctgcaatagttcgatatagc
agaaagactaagcagcagtatgtgatgtcggaaaatgaaaacggcaaagcgacgggctgg
tctgcatggtatgacgatggcaagtggcaagagcaggcggctaaaaagcctgctgccaag
tcgaaagcgaagaaaaaataa
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