Alteromonas mediterranea MED64: I533_11250
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Entry
I533_11250 CDS
T02958
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
amag
Alteromonas mediterranea MED64
Pathway
amag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
I533_11250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amag03400
]
I533_11250
Enzymes [BR:
amag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
I533_11250
DNA repair and recombination proteins [BR:
amag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I533_11250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
NAT10_TcmA_helicase
SLFN-g3_helicase
AAA_22
UvrD-helicase
UvrD_C
SH3_13
ResIII
PhoH
DEAD
RecD_N
nSTAND3
AAA_12
Flavi_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AGP82218
LinkDB
All DBs
Position
complement(2520475..2522670)
Genome browser
AA seq
731 aa
AA seq
DB search
MNNNQHSVSSFFDNLFGIEAIDKFVAKEFGFIEELSQEDAFIWAGILVYLSYMQRNGHSC
IYLKDVAGTTLFKDAVALENNASASSEKSSASEQHMALTQVMEPKVQQNKEEKAPKTGFE
VPELTPLLKIVKSALGNEQLAKLFVYDNGRLYSRRYYEFEQEVARSVVERAVLHPLHDDV
ADNVKALWPAIFPTTTTDQQDWQQIAVAKSLIQRFCVINGGPGTGKTYTVLRLLLALQAC
DEELKIVLAAPTGKAQQRMTESIMNSVEGLRGKVSDTALDSVPTEAVTLHRLLGLREHGV
ATKYNQHNKLSADVLIVDEASMVDLALMTRIVRALPDHARLYFIGDADQLPAVELGNVLE
QLVSDETALDFSHENPLAGGENSSNERTLGGVPSSMRQHIATLCPHLPLLPVNEQEKSYV
ATLQAPQRFKGQVARVATAIQRGDANGALAAIAQKNSGSKQGDNASQSKSAGKKSINTNS
RSRLQPGVHLWPESQLGGRELQQLAKESFLPIFEAQSAEEALNRLNYVRWLTPIRKGAMG
VEGLNNLAFDAIKHKIRRREGHFYQGQPIMIVKNHHPQRLSNGEVGVIWPDSTGKLYAWF
YQDTYVEEQQTGKSLSDSSNNSSAQNLGQQKQALRSISLSRVPQFETVYAMTIHKSQGSE
FNHVVLILPKPESEKAANLFHRGLVYTGLTRAKDGCLIISDSNTFSGMVATVDTRYSGLS
SAISRCAEKVL
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaaccaacattcagtgtcgtcgtttttcgataacttatttggcattgaagcc
atcgacaaattcgtggcaaaagaatttggctttatagaggaactgtctcaagaggacgcg
tttatatgggcgggaatattggtatacctgtcgtatatgcagcgaaatggacatagctgt
atctatttgaaagacgtggcgggaaccacgctttttaaagacgcggttgccttagaaaat
aatgcgtcagcgtcttcagaaaaaagcagtgccagtgagcaacatatggctctcactcaa
gtcatggagcctaaggtacagcaaaataaagaggaaaaagcgcctaaaacaggctttgag
gtaccagagttaacgcctttgcttaaaatagtgaaaagcgcccttggcaacgagcaatta
gccaagcttttcgtatacgacaatggcagactttatagccgccggtactatgaatttgaa
caagaagtggcgagaagcgtagtagaacgcgcagtacttcaccctttacatgatgatgta
gccgacaacgtaaaagccctgtggcctgctatatttcctaccaccactacagatcaacaa
gactggcagcaaatagcggtagccaaaagtttgatacagcgattttgcgtaataaacggc
gggccgggtacaggtaaaacctacaccgtgctgcgtttattacttgcgctacaggcctgc
gatgaagagctaaaaattgtactggcagcccctacgggcaaagcgcagcagcgtatgact
gagtctatcatgaatagcgtagaagggcttcgcggtaaggtaagcgacaccgcgcttgat
agtgtgcctacagaggccgttaccctgcataggctgttaggactcagagaacatggcgtt
gcgacaaagtacaatcaacacaacaaactatcagccgacgtacttattgttgatgaagcc
agtatggttgatttagccctaatgacgcgcatagttcgggcgttacctgaccacgcgcgg
ttatatttcattggtgatgctgatcagcttccagcggttgagctaggcaatgtgcttgaa
cagttagttagcgatgaaactgcgcttgatttttctcacgaaaacccattagccggtggt
gaaaacagtagtaatgagcgtacacttggcggtgtaccttcttcaatgcgacagcatatt
gccacgctttgcccgcatctgcctttgttacctgtaaatgaacaggaaaaaagctacgtg
gcaacgttgcaagcgccgcaacgcttcaaagggcaggtggctcgggtggcaacggcaatt
cagcgcggcgatgcgaacggtgcgcttgctgctattgcacaaaagaatagtggcagtaag
caaggcgataatgcttcacagtcgaaaagcgctggtaaaaaaagcatcaatactaatagc
cgctcacgtttacagcctggtgttcacttatggccagaaagtcaacttggtggtcgtgag
ctacagcagttagcgaaagagagcttcttacccatatttgaagcccaaagtgcagaggag
gcgctcaaccgccttaattacgttaggtggttaacccctatacgtaaaggcgccatgggg
gtggaaggtttgaataacttggcgttcgatgccattaagcacaagatcaggcgacgtgag
ggacacttctatcaaggtcagcctattatgattgtaaaaaatcatcatccacagcgtttg
tccaacggcgaggtaggcgtaatttggccggatagcacgggcaaattgtatgcgtggttc
taccaggatacgtatgtcgaagaacaacaaacaggcaagagcttgagcgatagctcaaat
aacagtagcgcgcaaaatctagggcaacagaagcaagcgctacgcagcatatcgctatca
agagtaccgcagtttgaaaccgtgtatgccatgactattcacaagtctcagggctctgag
tttaatcacgttgtgcttattttgcccaaacccgaaagcgaaaaagccgctaacctgttt
caccgggggttagtctatacagggttaacgcgggcaaaagacgggtgcctaattatttcc
gatagcaatacattcagcggcatggtggcaacggttgatacacgctattcaggcttatct
agcgcaataagccgatgcgctgaaaaagtactctga
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