Alteromonas mediterranea MED64: I533_14545
Help
Entry
I533_14545 CDS
T02958
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
amag
Alteromonas mediterranea MED64
Pathway
amag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I533_14545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amag03400
]
I533_14545
DNA repair and recombination proteins [BR:
amag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I533_14545
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I533_14545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_29
AAA_21
nSTAND1
AAA_16
DnaJ_CXXCXGXG
AAA_15
AAA_25
DUF4350
APS_kinase
Viral_helicase1
SLFN-g3_helicase
MeaB
APOBEC2
SNAD4
Motif
Other DBs
NCBI-ProteinID:
AGP82869
LinkDB
All DBs
Position
complement(3298513..3301017)
Genome browser
AA seq
834 aa
AA seq
DB search
MHKDEGRIQIRGARVHNLKNINVDIPRDCVVVFTGVSGSGKSSLAFGTLYAEAQHRYLDS
ISPYARRLIEQVEKPEVDALEGLPPAVGLHQRRQAPSVRSSIGSITTLSNSLRMLYSRAG
DYPEGQAIIYADGFSPNTPEGACERCDGIGKVFDTQAQLLVPDDTLTIREGAVAAWPGAW
QGKNLVRVLLSLDIDVDVPWRELPKATRDWILYTDEAPQMPVYRNYNLEQTRKALAEGEP
ASYKGKFISARRHVLDTFKTSQKEKVKQRISRFLSVTPCPRCHGKKLKKKALNVTVEGVD
IIDFSRLPLRDVNEKMNKLRGSVAGDTSERAQVIRNIADDVIDRIKPIIALGLHYLSLDR
STTTISVGELQRLRLATQLKSNLFGVVYVMDEPSAGLHPRDVESLVNALHDITKAGNSLL
VVEHNPYVIKGAKWVVDIGPSAGKEGGELIFSGPVDELAKVETSPTAEFVFNDKPLVSRE
KCNSSLTLSLKNVSRNNVNNIDIDIPLGVMTTVTGVSGSGKSSLISQALVELVKEGLGSV
KDKTDGEVNEVALLSAEDKVTQEGFIASGLDNISRLVVVDQSPIGRTPRSTLATYTGMFD
QIRRLFATTDDAKSREYDAGHFSFNVTKGRCPNCEGLGVVSVELLFMPSVYSPCSVCNGS
RFKDEVLDVHYKKHSIADILSLTVNEAQDVFEDNSAVLRGLKTLINVGLGYLTLGQSATE
LSGGEAQRIKLASELKRAQNNNTLYVLDEPTTGLHLSDTALLLEHLSTLVDSGNTVVMVE
HNMQVAAASDHVIDMGPGAGEDGGQIVAWGTPKDVAKNKESATAPFLKQACKIN
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
gtgcataaggatgaagggcgaattcagatacgtggtgctcgcgtacataacttaaagaat
atcaacgttgatatacctcgagattgcgttgtcgtttttaccggcgtatctggctcaggc
aagtcctcgttggcgtttggtacgctgtacgccgaagcgcagcatcgttatttagattcc
atatcgccctacgcccggcgtctaatagaacaagtcgaaaagccagaagttgatgccttg
gagggattaccgccagccgttggcttacatcagcgtcgccaagcgccgtcagtgcgttca
tctataggcagtataactaccctttctaacagcctgcgaatgctttattcccgagcaggg
gattacccagaaggccaagctattatttatgcagacggcttttcacccaacacacctgaa
ggcgcatgcgagcggtgcgacggtatcggtaaagtgtttgatactcaagctcagctttta
gtgcctgacgataccctaaccattcgagaaggggctgtggcggcttggcccggtgcgtgg
caaggtaaaaatcttgtgcgggtgctgctgtctcttgatattgacgtggatgtgccgtgg
cgtgaattgccgaaagcgacgcgcgattggatcttatatacagacgaggcgccacaaatg
cctgtctatcgaaattacaacctagaacaaacgcgcaaagcgctagcagagggcgaacct
gctagctataaagggaagtttataagcgccaggcgtcacgttttagatacctttaaaacc
tcacaaaaagaaaaagttaagcagcgtatttcccgtttcctctccgttacaccgtgcccc
cgttgtcatggtaaaaagcttaagaaaaaagcccttaacgttacggtagagggtgtcgat
attattgacttttcaaggctaccgctgcgcgacgttaatgaaaaaatgaataagctgcgg
ggttcagtagcaggtgatacttcagaaagggcacaagtcataagaaacatagcggacgat
gtcatcgatagaattaaacctattatcgcgctaggtctgcattacctttcactagataga
agcactactactatttcggttggcgagttacagcgactgcgcctcgctactcagctaaaa
tctaatttatttggcgtggtttatgttatggatgaaccttcggctgggttgcaccctcgc
gatgtcgagtccttagttaatgcgcttcatgatattactaaagcgggtaattctctgttg
gttgttgagcataacccctatgtgattaaaggggctaagtgggtagtagatattggccct
agtgccggtaaagagggtggtgagctgatattcagtgggccagttgatgaactcgcgaag
gtagagacttcgccaaccgcagaatttgttttcaatgacaaacccctcgtatcaagagaa
aaatgcaactcatcattgacgctaagtcttaaaaacgtgagcagaaacaatgtaaacaac
attgatattgatattccccttggcgttatgacaacggttactggcgtttcaggctctgga
aagtcgagtcttattagccaagcattggtggagctagtaaaagagggattgggtagcgtt
aaagataaaactgacggtgaagttaatgaggtcgcgttactttcagccgaagataaggtt
acccaagagggctttatcgccagcgggttagataatataagtcgcttagtggttgtagat
cagtctcctataggcagaacaccacgctcgacgctcgcaacctacacgggcatgttcgac
caaatcagacgcttatttgctaccactgacgacgccaagagccgtgagtatgatgccggt
catttttcttttaacgtgaccaaaggccgatgccccaactgtgaaggactaggtgtagtg
tcggtagaattactatttatgcccagtgtgtattcaccgtgttcggtctgtaatggttca
cggtttaaggatgaggttttagatgttcactataaaaaacactctattgccgatatttta
tctcttacagtcaacgaggcgcaggatgtatttgaggataacagcgcagttttgcgaggg
cttaaaacactaattaacgttggccttggttatcttacactggggcaaagtgccaccgag
ctatcaggaggtgaggcccagcgtattaagttggcctctgaacttaagcgtgcgcaaaac
aataacaccctttatgtgctggacgaaccgaccacaggtttgcacctttcagatactgca
ctgcttttggagcacttaagtacgcttgtggatagcggtaacaccgtggtgatggttgag
cataatatgcaagtggccgccgctagtgaccacgttattgatatggggccgggagctggc
gaggacggtggacaaatcgtggcgtggggcacaccaaaagacgttgcgaagaataaggaa
agcgcaactgcgccctttttgaagcaagcttgcaaaataaattaa
DBGET
integrated database retrieval system
