KEGG   Alteromonas mediterranea MED64: I533_17555
Entry
I533_17555        CDS       T02958                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
amag  Alteromonas mediterranea MED64
Brite
KEGG Orthology (KO) [BR:amag00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amag03400]
    I533_17555
Enzymes [BR:amag01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     I533_17555
    5.6.2.6  RNA 3'-5' helicase
     I533_17555
DNA repair and recombination proteins [BR:amag03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    I533_17555
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2 SNF2-rel_dom
Other DBs
NCBI-ProteinID: AGP83462
LinkDB
Position
complement(4010087..4012720)
AA seq 877 aa
MTSLPAAFSKWFKQKGWQLRDYQQTMLTEKDQHDCTLLIAPTGAGKTLSGFLPSLIELAE
TYGMSELAEAFGMSELAETVEDGAPIEVSETRQLSGSRETDEHVETKATDRQAKKGKEKG
GFNGLHTLYISPLKALTQDIHRNLLQPIEEMSLPITAETRTGDTPSHKRQRQRKKPPNIL
LTTPESLMLMLSYADADKLFGKLKRVIIDETHSLMANKRGDFLSLALARLSVFSPHCKRI
GLSATVAFPETLGAWLAGSDSVANIIKVKAGEKPKVEMLHSKARMPFGGFMARYAIDDIY
QAIENAQTTLVFVNTRAQSELLFQMLWEANKAALPIALYHGSLSKEQRRKTEAMMASGML
RAIVCTSALELGIDWGDVDKVIQVGAPKGVSRLLQRIGRANHRLDEPSEALLVPANRFEA
LECQAAITAIEKGELDGESPQPGALDIIPQFILNCLCSKADSPDTLYQEILTATPYQGLD
RDDFDKLWQFTQDGGSALNAYERYQRLTKNDDGTFSPANRRVIQRHRQNIGTIVEAGRLK
VKRIRRGNQGKIIGEVEEYFAQQLTPGDTFYFGGEVLRFEAIRDMQLHAKPAKAKEPKIP
SYAGGQMPLSTYLAEGVRAILATQKSWKALPAQVQEWLELQQAFSQLPSPEKVLVEQFPF
RQAHYTLYYTFDGRKANQTLGMLLTRRMEKMGVKPLSFSVTDYGLSVASVNAINQVQLQQ
LFQPDILGDELEDWMLQAPMLKRSFRQVAVVSGLTEQRYHASQKTMKQVTFSTDLIYDTL
REHDRDHILLKVARADAERELLDLRRLANLLIRYVNSATLVNLEKPSPMAIPIVLDVRSE
QVKGAGAQAIIEQANLYAEAETMLDEVRALLSGASVD
NT seq 2634 nt   +upstreamnt  +downstreamnt
atgacatcacttcccgcggccttttcgaaatggtttaagcaaaagggctggcaattacgc
gactatcagcaaaccatgctgacagaaaaagaccagcacgactgtacattattaatagcg
ccaactggagcaggcaaaaccctgtccggctttttgcctagcctaatcgaacttgctgag
acatatggtatgagtgaacttgctgaggcatttggtatgagtgagcttgccgagacggta
gaagacggggcgccaattgaggtctctgaaacgagacagctttctggctcgagagaaact
gacgaacacgtcgaaacaaaggctacagatagacaggcaaagaaaggaaaagaaaagggt
ggtttcaacggcctacataccctttacatctcgccacttaaagcactcacgcaagatatc
catcgtaatttgttacagccgattgaagaaatgtcgctcccgattacggcagaaacacgt
actggcgatacgccttcgcacaagcgccagcgtcaacgtaaaaagccgccaaacatcctg
ctcactacccctgaatcgctcatgctcatgttgagctacgccgatgctgacaaactattt
ggtaaactcaaacgggttattatcgacgaaacccatagcttaatggcaaacaagcgcggt
gactttttatcgttagcccttgcccgattaagcgtattctctccccattgtaaacgcatt
ggtctgtctgccactgtagcctttcccgaaacgttgggtgcgtggctggctggcagtgac
agtgttgccaatatcatcaaagtaaaagcgggggagaagccaaaagttgagatgctgcat
tctaaagcacgcatgcctttcggtgggtttatggcacgctatgctatcgacgatatctac
caagctattgaaaatgcccaaaccacattggtttttgttaatacccgtgctcagtctgaa
ctgctatttcaaatgctgtgggaggcaaataaagcagcgctgcccattgcgctgtatcac
ggcagcttgagcaaagagcaaagacgcaaaaccgaagccatgatggccagcggcatgctg
cgggccattgtatgtacctcggcgctagagcttggtatcgactggggagacgtcgacaaa
gtcattcaagtaggcgcgccgaaaggcgtgagcaggctgctgcaaagaatagggcgggct
aaccacaggctcgacgaaccgagcgaagcgctactagtacccgcaaatcgctttgaagcg
ctggaatgccaagcagcaatcaccgctattgaaaaaggcgagctagatggtgaaagccca
cagccgggcgccctagatattattccacaattcatcttgaactgtttgtgtagcaaagct
gatagccctgataccttgtaccaggagatacttaccgcgacgccttatcaagggctagat
agagatgatttcgataagctatggcagtttacccaagacggcggtagtgcccttaatgct
tatgagcggtatcagcgtttaacaaaaaacgacgatggcactttctcgccagctaatcgc
cgcgttattcaacggcacaggcagaacataggtactattgttgaagcggggcgacttaaa
gtaaagcgtatacgcagaggaaaccaaggcaagattatcggcgaagtagaagagtatttc
gctcagcaattaacgccgggagacaccttttattttggcggagaagtgctgcgctttgaa
gctattcgcgacatgcagcttcatgcgaagccggctaaagccaaagagccaaaaataccc
agctacgcgggtggccaaatgccgctatctacctatttggcggaaggcgtacgggcaatt
ctggctactcagaagtcatggaaagcactacccgcgcaagttcaagaatggcttgaactt
cagcaggcgttttctcagttacctagccctgaaaaggtgctggtggagcagtttccattt
aggcaggcgcactacaccttgtactacaccttcgacggtcgcaaagcgaaccaaacatta
ggtatgttgctaacgcggcgaatggaaaaaatgggggttaaacctttaagcttcagcgtg
actgattatggcttgtcggtggcatcggtaaatgctattaatcaagtacagctgcagcag
ctatttcagccggatattctaggcgacgagctagaagattggatgctacaagcacctatg
ctcaagcgctcttttaggcaagtggcggtggtaagcggcctaacagaacagcgttatcac
gccagccaaaaaaccatgaagcaggtaacgttttctaccgaccttatttacgataccttg
cgagaacacgaccgcgaccacattttacttaaagtagcgcgggccgatgcagagcgtgag
ctactggatttacgacgactcgctaatttacttattcgctacgtaaattcagcgacgtta
gtgaaccttgaaaaaccgtcgcctatggccatacccattgtactagatgtacgtagcgaa
caagtgaaaggcgcaggggcgcaggctattattgagcaagctaatttatatgccgaagct
gaaactatgttagatgaagttcgtgcattgctatcaggggctagcgtcgactaa

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