Aquitalea magnusonii: DLM_0732
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Entry
DLM_0732 CDS
T05698
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amah
Aquitalea magnusonii
Pathway
amah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLM_0732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amah03019
]
DLM_0732
03009 Ribosome biogenesis [BR:
amah03009
]
DLM_0732
Enzymes [BR:
amah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DLM_0732
Messenger RNA biogenesis [BR:
amah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DLM_0732
Ribosome biogenesis [BR:
amah03009
]
Prokaryotic type
rRNA processing factors
DLM_0732
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BBF84385
UniProt:
A0A3G9GA32
LinkDB
All DBs
Position
757610..760723
Genome browser
AA seq
1037 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGIITRIEPSLEACFVDY
GTERHGFLPFKEVSRSYFQGYDGGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKDLLSQLEVPNGMSLIARTAGIGRNLEELQW
DMGYLMQLWRAIEGAAGSQSAPFLILQEGSLVIRAIRDYYHPDIGEILIDTDEIYEQARQ
FMSHVMPNMVHRVKLYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALVSID
VNSARSTKGADIEETALRTNVEAAEEIARQLRLRDLGGLIVIDFIDMENPKNQREVENKL
RDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTESSALHI
LRIIQEEAMKENTGAVHAQVPVDVATFLLNEKRAEIHSIEERLDVDVVLIPNIHLETPHY
KIARIRHDDLAELGDGPSYLRVEVQEEDIITNFGQEKPKAERQEAAVKGITPQQPAPVSS
QPVAAAAPVVAEQGVVSRFFGWVKSLFAEPEAAPQENEKKKPAAAGQREGQRNGNRQRNN
ERRPGSQARRDHNERRHGEEAGKRPTEARADGERQDGRRQSSRDRGDRQERPERVERPER
AERTERAERPERAERSEQPQREPRQRREREPRENREAREQNARPQTEERSEQAAPQAAEK
PSRRRQQAERNEADKPQAAAQEELNLNSAEGVEAAAESAEQQERGERGRRRRGRRDRRRD
NVEGDNTAQVAETAAGDVTAEVAAVAGVAAAAAVAVAADAVAQPAAEVIAQPAAEAAVAV
DVVEVAVAPAEVAQEVVAPVAAPVETLAVEAAPVEVAPEPAAQAEQVVVAEVAAPAAVVV
TEAAVAVETVEVAEVAAPLEQISTVVETKVAQAEVAIAAEAAPAEQPAAAQVAEVAVSEP
VAVAPVVVETAAAAQPKLEAELPADLGGLVMVATKAVSDVVVPQVEVPTGPRRRDVVRQA
AEQPVAIELKQVETRNS
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgcaacgcaggccgaagagctgcgcgttgccatcgttgac
gggcaaaagctcgttgacctcgatatcgaaaccgttggcaaggaacaacgtaaagggaac
atctacaagggcatcatcacccgcatcgagccctcccttgaagcctgctttgtcgattac
ggtaccgaacgtcacggcttcctgccgttcaaggaagtctcccgttcttatttccagggc
tatgacggtggccgtccgcgtattcaggacgtgctgcgtgaaggcatggaagtggttgtc
caggtggaaaaggacgagcgtggcaacaagggcgcagccctcaccacctatatcagcctg
gctggccgctatctggtcctgatgccgaataacccgcgtggtggtggcgtatcgcgccgc
atcgagggtgaagaacgtcaggaactgaaagacctgctctcccagctggaagtccccaat
ggcatgagcctgattgcccgtaccgccggtatcggccgcaatctggaagaactgcaatgg
gacatgggttacctgatgcagctgtggcgtgccattgaaggcgcggccggctcgcaaagc
gcgcctttcctgattctgcaggaaggcagcctggtgattcgcgccatccgtgactactac
catccggacatcggcgaaatcctgatcgacaccgacgaaatctacgaacaggcccgccag
ttcatgagccacgtgatgcccaacatggtgcatcgcgtgaagctgtacaaggatcacgta
ccgctgttctcccgcttccagatcgaacaccagatcgaaaccgccttctcgcgcagcgtg
cagctgccgtccggtggtgccatcgtgatcgaccacaccgaggcactggtctccatcgac
gtcaactccgcccgctccaccaagggtgccgacatcgaggaaaccgcactgcgcaccaac
gttgaagccgccgaagaaatcgcccgccagctgcgtctgcgcgacctgggcggtctgatc
gtgatcgacttcatcgacatggaaaacccgaaaaaccagcgcgaagtggaaaacaagctg
cgcgatgtgctgaagcacgaccgcgcccgcgtgcaaatgggcaagctgtcccgctttggc
ctgctggaactgtcacgtcagcgtctgcagccgtcgctgggcgaaaccagccacgagcct
tgcccgcgctgccatggcatcggcttcatccgtggtaccgaatcctccgccctgcacatc
ctgcgcatcatccaggaagaggcgatgaaggaaaacaccggtgcagtacacgcacaagtg
ccggttgacgtcgccaccttcctgctgaacgaaaagcgtgccgaaatccactccatcgaa
gagcgtctggacgtggatgtggtgctgattccgaacatccatctggaaaccccgcattac
aagatcgcccgtatccgtcacgacgatctggccgaactgggcgatggcccgagctatctg
cgcgtggaagtgcaggaagaagacatcatcaccaactttggtcaggaaaagccgaaggcc
gagcgtcaggaagccgcagtcaagggcattaccccgcaacagccggccccggtatcctcc
cagcccgttgccgccgctgcaccggtggtggccgagcagggcgtggtcagccgtttcttc
ggctgggtgaagagcctgtttgccgagccggaagctgctccgcaggaaaacgagaagaaa
aaaccggccgctgccggccagcgcgaaggtcagcgcaatggcaaccgtcagcgtaataac
gagcgtcgtccgggcagccaggcgcgtcgtgatcacaatgaacgtcgtcatggcgaagaa
gccggcaagcgtccgaccgaagcccgtgccgatggcgagcgtcaggatggccgtcgtcag
tcctcccgtgaccgtggcgatcgtcaagagcgtccggaacgcgtagaacgcccggaacgt
gccgagcgtaccgaacgcgcagagcgtccggaacgtgccgagcgcagcgaacagccgcaa
cgcgaaccgcgtcagcgtcgtgaacgcgagccgcgtgaaaaccgcgaagcgcgtgaacag
aatgcccgcccgcaaactgaagagcgtagcgaacaagctgcaccgcaggcggccgagaag
ccgtcccgtcgtcgccagcaggccgagcgcaacgaagctgacaagccgcaggctgccgcg
caggaagaactgaacctgaacagcgctgaaggtgtggaagctgccgccgagtctgccgag
caacaagagcgtggcgaacgtggtcgtcgtcgtcgtggccgtcgtgaccgtcgccgtgac
aatgtcgaaggcgataacactgctcaggtggcagaaactgctgctggcgatgtgactgcc
gaagtggcggcggttgctggcgtggctgccgctgctgcggttgcggtagctgccgacgct
gtcgcccagccggctgccgaagtgatcgcccagccggcagcagaagctgccgttgcagtg
gacgtggtggaagttgccgtggctccggccgaggtagcgcaagaagttgttgccccggtg
gcggcaccggtcgagacccttgctgttgaagccgccccggttgaagttgcacccgaaccg
gctgcgcaggcagaacaagtggtggtggccgaggtggctgcgcctgctgcagttgtcgtt
accgaagctgctgtggctgtcgagactgtggaagttgccgaagtggctgccccgctggag
cagatcagcaccgtggttgaaaccaaggtggcgcaggctgaggtggccattgccgccgaa
gcggcacctgccgaacagcctgctgctgcccaagttgcagaagttgccgtgagcgagcct
gtggccgtggcaccggtggtggtggaaactgcggcagcagcccagcccaagctggaagcc
gagttgccggcggatctgggcggcctggtgatggttgccaccaaggcggtatccgacgtg
gtggtgccacaagtggaagtgccgactggtccgcgtcgccgcgatgtggtgcgtcaggca
gcagagcagccggtggcgattgaactcaagcaggtggaaacccgcaatagctga
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