Aquitalea magnusonii: DLM_3133
Help
Entry
DLM_3133 CDS
T05698
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amah
Aquitalea magnusonii
Pathway
amah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DLM_3133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amah03400
]
DLM_3133
Enzymes [BR:
amah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DLM_3133
DNA repair and recombination proteins [BR:
amah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DLM_3133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
BBF86730
UniProt:
A0A3G9GFS2
LinkDB
All DBs
Position
3307331..3310732
Genome browser
AA seq
1133 aa
AA seq
DB search
MLDTLPRIAPAGQKTRCPALPDGLDAAVLAGLAQAGHTLLVLTADAQAAQRLKAELPWFA
PDIKAALLPDWETLPYDHFSPHGELVSERLATLWQIHRGECQVVIAPVSTAMTRLAPVSY
LLGRTFLLQGKQQLDVEQLRADMVMAGYSHVTQVMAPGEFSIRGGLVDLFPMGSPLPYRI
DLFDKEIDSLRTFDPDSQRTLYPVPEIRMLPAREYPADESGVTAFRQHYRERMEGDPSKS
RIYKDVSANLFPAGIEYYLPLFFDETATLFDYVGEAALVVLHRDVAAAADTFWKDVQNRY
HMAQGDPERPVLPPADVFLRQDEFLGRIKPYSRIEIPAAGEADATSLALPDLAVERRADN
PLHKLAHYLQHSGQRVLLTAESLGRRETMVQFLQEHGIKPQLIDNWQEFATGNMPLALVV
APLYSGFAQQQPPLSIITESELYQHIARSHTRRRHVKMSSDSMLRDLAEVKSGDPVVHEQ
HGIGRYIGLVSMDLGEGETELMQLEYADNATLYVPVSQLHLISRYAGGPSEQAPLHKLGN
PAWEKAKKKAAEKARDTAAELLNLYAQRAAREGHSFTLSHHDYDAFAAGFGFEETIDQAN
AIEAVIHDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVALLVPTTLLAEQHFQ
NFSDRFNDWPVKIAELSRFRSAKESKAALAGLAEGTVDIVIGTHKLVQPDVQFKNLGLVI
IDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSVIATAPNRRLAVK
TFISPASNGVIREAILRELKRGGQVFFLHNEVDTIENMREKLAELVPEARIGVAHGQLRE
RELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSH
HQAYAYLLTPDGMTKDAGKRLEAIQLSGELGAGFYLAMHDMEIRGAGEVLGEGQSGEMQE
VGFSLFTEMLKQAVRDLKKGREPDLDAPLGVTTEINLHSPALLPDAYCPDVHERLVLYKR
LATCDTEQDIDAIHEELIDRFGLPPQTVKTLIESHRLRLLAKPLGVAKLDASEVAIQLQF
IKNPPIDPMKIIQLIQSKKNYKLAGQDKLRVESKIEEVGLRVVRVKELLKELS
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgttggacacactgccccgcattgcgccggccggtcaaaagacccgctgccccgccctg
cccgatggcctggatgctgccgtactggcaggcctggcccaggcaggccacaccttgctg
gtcctgactgccgatgcccaggccgcacagcggctgaaggccgaactgccatggtttgcc
cccgacatcaaggccgccttgctgcccgactgggagacgctgccctacgaccatttctcc
ccgcacggcgagttggtgagtgagcggctggccacgctctggcagatccatcgcggcgaa
tgccaggtggtcatcgccccggtcagcaccgccatgacgcggctcgcgccggtcagctac
ctgctgggccgcaccttcctgctgcaaggcaaacagcaactggatgtggaacaactgcgc
gccgacatggtgatggcaggctacagccacgtcacccaggtgatggcaccgggcgagttt
tccattcgtggcggtctggtggacctgttccccatgggcagccccctgccctaccgcatc
gacctgttcgacaaggaaatcgacagcctgcgcaccttcgacccggacagccagcgcacg
ctgtacccggtgccggaaatccgcatgctgccggcgcgcgaatatccggcggatgaaagc
ggtgtcaccgccttccgccagcactaccgcgaacgcatggaaggcgatccgtccaagagc
cgcatttacaaggacgtatcggccaatctgttccccgccggcatcgagtactacctgccg
ctgttcttcgacgaaaccgccaccctgttcgactacgtgggggaagcggcgctggtggtg
ctgcaccgcgacgtggccgctgccgccgacaccttctggaaagacgtgcagaaccgctac
cacatggcacagggcgacccggaacgcccggtactaccgcctgccgatgtgttcttgcgt
caggacgaattccttggccgcatcaagccttattcgcgcattgaaatcccggctgctggc
gaagcggatgccaccagcctggccctgcccgatctggcggtggagcgccgcgccgacaac
cccttgcacaagctggcgcattatctgcaacacagcggccagcgcgtgctgctgaccgca
gaaagcctgggccggcgcgaaaccatggtgcagttcctgcaggaacacggcatcaagccg
cagctgatcgacaactggcaggagtttgccaccggcaatatgccgctggcgctagtggtg
gccccgctgtattccggctttgcccagcaacaaccaccgctgtccatcatcaccgagagc
gagctgtaccagcacatcgcgcgcagccacacccgccgccgccatgtgaagatgagctcg
gactccatgctgcgcgatctggccgaggtgaaatccggcgacccggtggtgcacgaacag
cacggcatcggccgctatatcggcctggtgtcgatggacctgggcgaaggcgaaaccgag
ctgatgcagctggagtacgccgacaacgccacgctctacgtgccggtcagccagttgcac
ctgatttcgcgctatgccggtggcccgtccgagcaggccccgctgcacaagctgggtaac
ccggcctgggaaaaagccaagaagaaagctgccgaaaaagcacgcgacaccgccgccgag
ctgcttaacctctacgcccagcgcgccgcgcgcgaaggccacagcttcaccctgtcgcac
cacgattacgatgcctttgccgccggtttcggctttgaggaaaccatagaccaggccaat
gccatcgaagccgtcatccacgacatgtgcagcggcaagccgatggaccgtctggtatgt
ggcgacgtgggcttcggcaagaccgaagtggcgctgcgcgccgcttttgtcgcggtgatg
ggcggcaagcaggtggcgctgctggtgcccaccaccctgctggccgagcagcatttccag
aacttctccgaccgcttcaacgactggccggtgaagattgccgagctgtcgcgctttcgc
agcgccaaggaaagcaaggccgcgctggcgggcctggccgagggcacggtggacatcgtc
atcggcacccacaagctggtgcagccggacgtgcagttcaagaacctggggctggtgatc
atcgatgaagagcaccgctttggcgtgcgccagaaggaacagctcaagcgcctgcgcgcc
aatgtggacgtgctcaccctcaccgccacgccgattccgcgcacgctgtccatggcgctg
gaaggactgcgcgacttctccgtcatcgccactgcgcccaaccgccgcctggcagtgaaa
accttcatcagcccggccagcaatggcgtgatccgcgaggccatcctgcgcgaactcaag
cgtggcggtcaggtgttcttcctgcacaacgaggtggacaccatcgagaacatgcgcgag
aaactggccgaactggtgccggaagcccgcatcggcgtagcccacggccagttgcgcgaa
cgtgagctggaacaagtaatgcgcgacttcctgcagcagcgcttcaatgtgctgttgtgc
tccaccatcatcgaaaccggcatcgacattcccaatgccaacaccatcctgatcaaccgc
gccgacaagttcggcctggcccaactgcaccagttgcgcggccgggtgggccgcagccat
caccaggcctatgcctatctgctgaccccggacggcatgaccaaggacgccggcaagcgg
ctggaagccatccagttgtccggcgagctgggggccggtttctatctggcgatgcacgat
atggaaatccgtggcgcgggtgaggtactgggtgaaggccagtcgggcgaaatgcaggaa
gtgggcttttcgctgtttaccgagatgctcaaacaagcggtgcgcgacctgaaaaaaggc
cgcgagccggacctggacgcaccgctgggtgtcaccaccgaaatcaatctgcacagcccg
gcgctgctgccggatgcctactgcccggacgtgcatgaacggctggtgctgtacaagcgc
ctggccacctgcgacaccgagcaggacatcgacgccattcatgaggagctgatcgaccgc
ttcggcctgccaccgcaaacggtgaaaacgctgattgaaagccaccgcctgcgcctgctg
gccaagccgctgggcgtggccaagctggatgccagcgaagtggccatccagttgcagttc
atcaagaacccgccgatcgacccgatgaaaatcatccagctgatccagagcaagaagaac
tacaaactggccgggcaggacaagctgcgggtggagtcaaaaatagaagaagtgggcctg
cgcgtggtgcgggtgaaggagctgctgaaggagctgagctag
DBGET
integrated database retrieval system
