Alteromonas mediterranea UM7: I635_08995
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Entry
I635_08995 CDS
T02724
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amai
Alteromonas mediterranea UM7
Brite
KEGG Orthology (KO) [BR:
amai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amai03032
]
I635_08995
03400 DNA repair and recombination proteins [BR:
amai03400
]
I635_08995
Enzymes [BR:
amai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I635_08995
DNA replication proteins [BR:
amai03032
]
Prokaryotic type
DNA Topoisomerases
I635_08995
DNA repair and recombination proteins [BR:
amai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I635_08995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Gp-FAR-1
Zn_ribbon_LysW
Zn_ribbon_TFIIB
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AGP97323
LinkDB
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Position
1998196..2000856
Genome browser
AA seq
886 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTKALGKVEPKKPAKELKTLSEE
ARQEYLRRHEYLKLVDRMGVDPEKDWKAHYQVLQGKEKVVNELKKLAKDADTIYLATDLD
REGEAIAWHLQELLGKKDKTYQRVVFNEITKNAIQDAFSDPGELNISRVNAQQARRFLDR
VVGFMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWDVHADLTSQEKAA
LRMLVAKYQGNGFKPKNKAEADKALADLESAKYTVESRESKPTQSRPSAPFITSTLQQAA
STRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQEALDSARAYISDNFGNKYLPDSPI
RYGSKEGAQEAHEAIRPSNVNIGAASLGDMERDAQRLYELIWRQFLACQMTPAKYDATTI
KVAAGDYELTAKGRVLKFDGWTRVQPQLRKKGDEELMLPDVQKGDVLDLKALDPKQHFTK
PVARFNEASLVKELEKRGIGRPSTYASIISTIQDRGYVRLENKRFYAEKMGEIVNDRLME
NFDDLMSYDFTANMEQHLDDIAEGNKDWKDVLNEFYSGFYGKLLNAEKDPEEGGMRLNQA
IPAGIECDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELE
TEALRSKKRCPKCGTAMDSYLVDETRKLHVCGNTPTCDGTLVEAGTFKIKGYDGPIIECD
KCGSDMELKNGRFGKYFGCTNEECKNTRKLLRNGEAAPPKEDPVDLPELPCEKSDAHFML
RDGASGIFLAAHNFPKSRETRAPKVEELARFRDRISPKFYYLADAPKTDPDGNPAIVRYS
RKTKQQYVMSENENGKATGWSAWYDDGKWQEQAAKKPAAKSKAKKK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcactggtcatagtcgagtcaccagccaaagcaaaaacgataaataaatat
cttggtaaagattttatcgtaaaaagttcggttggccatgtgcgagatcttccaacgaag
gcgttaggcaaagtagagcctaaaaaaccggctaaagaactcaaaactttaagcgaagaa
gcgcgtcaagaataccttcgacgtcatgaatatttgaaacttgtagacagaatgggtgtg
gatccagagaaagactggaaagcgcactaccaagtattacaaggtaaagaaaaagtcgtt
aacgagcttaaaaaattagcgaaagacgcagacaccatttatctcgcaaccgatttggat
cgcgagggagaggccatcgcttggcatctgcaggagttgctgggtaaaaaagataaaacg
tatcagcgtgtggtgtttaatgaaattaccaaaaacgcgattcaagatgcgttttcagac
ccgggtgagctaaatatatctcgtgtcaatgcgcagcaagcacgccgattcttagaccgt
gttgtgggctttatggtgtcgcccctgctttggaaaaagattgcccgaggcctatctgca
ggccgtgttcaatcggtagcagtacgcttagtggtggagcgcgagcgagaaattaaagcg
tttgtgccggaagagttttgggatgtgcacgccgacctgaccagtcaagaaaaagcggca
ctacggatgctggtggctaagtatcaaggcaacgggtttaagccaaaaaataaggcagaa
gccgacaaagcgctggctgatttagaaagtgcgaaatacacggtagaaagccgcgaatcg
aagccaacgcaaagccgcccatcagcgccgtttatcacgtctacactacagcaagcggca
agtacgcgactaggctttggtgttaagaaaaccatgatgatggcgcagcgtctttatgaa
gcgggttacatcacctatatgcgtaccgactcgacaaatttgagtcaagaagcgctagac
agtgctcgagcgtatatttccgataatttcggaaacaagtatttaccagattccccaatt
cgctacggcagcaaagaaggcgcgcaagaagcgcacgaagcgattcgcccgtctaatgtt
aatatcggcgctgctagtttaggtgatatggaacgtgacgctcagcgtctttacgagttg
atttggcgacaatttttggcctgtcaaatgacgccagcgaagtacgacgcaaccaccatc
aaagtggcggcgggtgattacgagctaaccgccaaaggccgtgtacttaagtttgacggt
tggacgcgcgtgcagccacagcttcgcaaaaaaggcgatgaagaattaatgttgccagat
gtgcagaaaggcgatgtgcttgacttgaaagcacttgatcctaagcagcatttcacaaaa
ccagtggcacgatttaacgaagcgtctttggtaaaagagctggaaaaacgcggcattggc
cgcccgtcgacctacgcgagtattatctcaaccattcaagaccgcggctatgtacgttta
gagaacaagcgtttttatgccgagaaaatgggtgagatcgttaacgatcgtttaatggaa
aacttcgacgacttaatgagttacgactttacggccaacatggagcaacatctcgatgat
attgctgaaggcaacaaagactggaaagacgtactcaatgaattctacagtgggttttac
ggtaagcttctaaacgcagagaaagatcctgaagaaggcggtatgcgcctaaatcaggcg
ataccagcgggtattgagtgcgacaaatgcggccgtgaaatgaacgtaagaaccgcgtca
acgggtgtattcttaggttgttctgggtataacttgccgcctaaagagcgctgcacgaat
actatgaacttaacgcctggcgatgaagtcgttaaggtagatgacgaagaagagcttgaa
accgaagcccttcgttctaaaaagcggtgtcctaaatgcggcactgccatggacagttac
ttggtagatgaaacccgtaagttacacgtttgtggtaatacacctacctgtgatggaacc
ttggttgaagcgggtacctttaaaattaaaggctacgacggcccgattatcgaatgcgat
aagtgcggcagcgatatggagcttaaaaacggtcgattcggtaaatactttggctgtacc
aacgaagagtgtaagaatacccgtaagcttttacgaaacggcgaagctgcaccacctaaa
gaagacccagtagatttacctgagctaccgtgtgaaaaatctgatgctcactttatgcta
cgtgacggtgcgtcgggcatctttttagcggcccacaactttcctaaatcgcgtgaaact
cgtgcgccgaaagtggaagaacttgcacgctttagagatagaatttcgccaaaattctat
tatcttgcagatgcgccgaaaaccgatcctgacggaaaccctgcaatagttcgatatagc
agaaagactaagcagcaatatgtgatgtcggaaaatgaaaacggcaaagcgacgggctgg
tcagcatggtatgacgatggcaagtggcaagagcaggcggctaaaaagccggctgccaag
tcgaaagcgaagaaaaaataa
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