Acetobacterium malicum subsp. dehalogenans: ACIUZZ_02655
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Entry
ACIUZZ_02655 CDS
T11223
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amaj Acetobacterium malicum subsp. dehalogenans
Pathway
amaj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACIUZZ_02655 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amaj03400
]
ACIUZZ_02655 (mfd)
Enzymes [BR:
amaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACIUZZ_02655 (mfd)
DNA repair and recombination proteins [BR:
amaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACIUZZ_02655 (mfd)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XOB58951
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Position
572751..576182
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AA seq
1143 aa
AA seq
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MELLYQNLLKVESIQTILNNLSPGEIINISNMNTSFKEVLTGLIFKQQMSRILYVTATDY
QAQKTARNLQKILGDQVLYCPAEPIHDYFADVHSQEINHQRLVVFEQLLSNQSFVVVMGA
ETLLKKQMPREKFQALGFSLAVEDSWDPIILTNRLFELGYEPVSQVEARGQYAHRGGIID
VFSTTGQEAYRIEFFGDTIESLRTFDPQTQLSTDSVDQVIILPGREIILAADERAKALKQ
IAKNYGDIPGYQALIERISEDPGGHDETLFAFIRTEGMLTDYLGNALVIWDEPPRIKEAQ
TVFINKLHSDFQTLMDEQLMFPEEKNKFYSFSKIEKALESQTQLRLHLFTSRAKKGLSLD
LGVKENDSFLGQIPLFIEYVQKQLEQDAIIHLRARDEAGLEKLKSFLTDANIHRFTNEAL
PGVQLVTGEISGGFELTGKKLICLNQSEIIKESSRGKKRRRQKGRKIDSFTQLNQGDFVV
HDTHGIGVYRGIEQLKIDETIKDLLVIEYANDAKFYCPVDQMDAIQVYVGTGEKKPKINQ
LGTNDWSKSKSRVKAAVEEMADELIALYAKRQNLKGYAFGPDSSWQQEFEDSFPHEETND
QLQAVDEIKEDMESARPMDRLLCGDVGYGKTEVALRAIFKAVMEGKQVAFLVPTTILAQQ
HYQTALDRFKKYPVSIGLLSRFRSKSDQDKTLKDLAAGQVDLIIGTHRLLSKDVIFKDLG
LLVVDEEQRFGVGHKERIKQLKENVDVLTLSATPIPRTLHMSMIGVRDMSVIDEPPAGRR
PVLTYVMEYNEAIVKDAIQRELARRGQVYFVHNRIHDIFEVARKIQKLVPEARIVVAHGR
MTGQELEDIMVDFLEREYDVLVTTTIIESGLDIKNANTLIIDNGDYMGLSQLYQLRGRVG
RSDVQGYTYVTHRPKVLSEISQKRLKAIKDFTAFGSGFKIALRDLEIRGAGNILGAAQSG
NLATIGYELYCRILDQAIHERLGKEMDFSASELLINLNVSSYIPENYISDEELKYDIYKK
LSYVKSKDDYDELEDELLDRFGEIPDGVYNLMALAMIKHLGRSLGMTEIRERGNSVLFTF
DNTREITIPDPELMKELFNTYNIKFNAGKSDQIRWRIVLKHDQDQAYLRALGEFLGRLVS
SKN
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggaattactttatcaaaaccttttgaaggttgaatcgatccaaaccatcttgaataat
ttatccccgggagagatcattaatatctccaatatgaacaccagctttaaagaagtgctt
accgggctgatcttcaagcagcagatgagccggattctttatgttacggcaaccgattat
caggcccagaaaacggcccggaatctgcagaaaatcctcggggatcaggttctttattgc
ccggccgaaccgattcatgactatttcgccgatgtgcacagtcaggaaatcaatcatcag
cggttggttgtattcgaacaactgttgtcaaatcagtcctttgtggtggtgatgggggcg
gaaacgctgttaaagaagcagatgcccagagaaaaatttcaggctctgggtttttccctg
gccgtagaggacagctgggatcccattatcctgaccaatcgtctttttgaactgggttat
gaaccggtttcccaggtcgaagcgagagggcagtatgcccatcggggcgggattattgac
gttttttctactactggtcaggaagcataccggattgaattttttggcgataccatcgaa
tcgttgcgcacctttgatccccaaacccaactgtcaaccgattcggtggatcaagtaatc
attctgcctggtcgcgagattattttagcagcagacgaacgggccaaagcgctcaaacaa
atcgccaaaaattatggcgatattccgggttatcaggcgctgattgaacgaatcagtgaa
gacccgggggggcatgatgaaacgctgtttgcctttatcaggaccgaggggatgctcacg
gattatctgggaaatgctctggttatctgggatgaaccgccccggatcaaagaagcgcag
accgtttttatcaataagctgcacagtgattttcagaccctgatggatgagcagctgatg
tttccggaagaaaaaaacaaattttattccttttcaaaaattgaaaaggcgctggaaagc
cagacccagttaaggctgcatttattcacatcccgggctaaaaaagggctcagcctggat
ttaggagtcaaggaaaatgactcgtttttaggccagatcccgctatttattgaatatgtc
caaaaacagttggaacaagatgccatcatccatttgcgggcccgggatgaagcggggctg
gaaaaactgaaaagctttttaaccgatgcgaatattcaccgctttaccaatgaggcgttg
ccgggagttcagttggtcactggcgaaatcagcggcggctttgaattgactggaaaaaag
ctgatttgtctcaatcaaagtgagatcatcaaagaatctagccgggggaaaaaacgtcgt
cgccaaaaaggacgaaaaatcgattcctttacgcaattgaaccagggcgattttgtggtc
cacgatacccatggtatcggagtctaccggggcattgaacaattaaaaatcgatgagacc
attaaagacttactggtcatcgaatatgctaatgatgccaagttctactgtccggtggat
caaatggacgccatccaggtttatgtcggaactggcgagaaaaaaccgaagatcaaccag
ttaggcaccaatgactggagcaagtccaaatctcgggttaaagcggcggttgaagaaatg
gccgatgaactgattgccctttacgctaaacggcagaatttaaaaggttatgcctttggt
ccggattccagctggcagcaggagtttgaggactcttttccccatgaggaaaccaacgat
cagctccaggctgtcgatgagattaaggaagatatggaatcggcccgaccgatggatcgg
ctgctctgcggcgatgtcgggtatggcaaaaccgaggtcgccctgcgggctatttttaaa
gcggtgatggagggcaaacaggtagcctttctggtgcccacgacgatattggcccaacaa
cattatcagaccgccttggatcggttcaaaaaatatccggtcagcattggcttgctcagc
cgcttccgatccaaatccgaccaggataaaaccttaaaggatctggctgctggccaggtg
gatctgatcatcggcacccatcggctgttatcaaaagacgtcatcttcaaagatctgggt
ctactggtggtggacgaggaacaacggtttggggtgggtcacaaggaacggatcaagcag
cttaaagaaaatgtcgatgtgttgacgctcagtgctaccccgattccccggaccctgcac
atgtcaatgatcggggtccgggatatgagcgttatcgacgagccgccggccggccgccgg
ccagtgctgacctacgtcatggaatacaacgaagccatcgtcaaagatgccattcaacgg
gaattggccagacggggacaggtctattttgtccacaaccggatccacgatatttttgaa
gtggcccgaaaaattcagaagttggttcccgaagcccggattgtggtggcccatggccgg
atgaccggtcaggaactggaagatatcatggtcgattttttagaacgggagtatgatgta
ttggtgaccaccaccatcatcgagtctggtctggatattaaaaatgccaataccctgatt
atcgacaacggtgattatatgggtctgtcgcaattatatcagctccggggacgggtgggg
cgatccgatgttcaaggctacacctatgtgactcatcggcccaaggtgctctcagaaatt
tcccagaaacgtttaaaggctatcaaagactttaccgcctttggttcgggttttaaaatt
gcccttcgggatctcgaaatcagaggggccggaaatattctgggagcggcccagtcgggt
aatctggcgaccatcggttatgaactctattgccggattctggatcaggccatccatgaa
cggctcggtaaagaaatggatttctcagccagcgagctgctgatcaacctcaatgtcagc
agttatatccccgaaaactatatttcggacgaggaacttaaatacgatatttataaaaaa
ctgtcctatgttaaatccaaagacgattacgacgagctggaggatgaactcctggatcgc
tttggggaaatccccgatggggtctataatctgatggctttggcgatgattaagcacctg
ggccgatcactgggaatgactgaaattcgggaacggggaaacagtgttttattcaccttt
gacaataccagggaaattaccattcccgatccggaattgatgaaggaactgtttaacacc
tacaatattaagttcaacgccggaaagtcagatcagatccgctggcggattgttttgaaa
cacgatcaggatcaagcttacctgagagctttaggtgaattcctgggacgattagtttcg
tcaaagaattaa
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