Acetobacterium malicum subsp. dehalogenans: ACIUZZ_06365
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Entry
ACIUZZ_06365 CDS
T11223
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amaj Acetobacterium malicum subsp. dehalogenans
Pathway
amaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACIUZZ_06365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaj03019
]
ACIUZZ_06365
03009 Ribosome biogenesis [BR:
amaj03009
]
ACIUZZ_06365
Enzymes [BR:
amaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACIUZZ_06365
Messenger RNA biogenesis [BR:
amaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACIUZZ_06365
Ribosome biogenesis [BR:
amaj03009
]
Prokaryotic type
rRNA helicases
ACIUZZ_06365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
AAA_19
Helicase_RecD
UvrD-helicase
DapH_N
Motif
Other DBs
NCBI-ProteinID:
XOB59620
LinkDB
All DBs
Position
1333517..1335007
Genome browser
AA seq
496 aa
AA seq
DB search
MISKKFNQYQLSDELLKAIEKLNFENPTKVQEAVIPIALEKKDILCKAQTGSGKTAAFGI
PICELLDWEENKPQALVLTPTRELALQVHEDIFNIGRFKRVKVSALYGKSPIRRQEKELK
QKTHVVVGTPGRVMDHIERGTFITDEIRFLVIDEADEMLNMGFIDQVEEIINEMPKNRVT
MLFSATLENEIQRLSKKYMNDPQIIEIEAEAKRTDAIEQFVYKTGHEDKLDVLKDVLVVE
NPDSCIIFCNTQEMVNAIYNLLGKDNKACEKIHGGMEQDDRTLVMQRFKKGAFRYLIATD
VAARGIDVHEISLVINFDVPWEKETYVHRIGRTGRRGTTGKAITLVSAKEGRLFRDIENY
TDKEIIEKECPTLSTVHSLKAAFIEKLQEKPEEKLDKAHDLTREITKIHINAGKKTKMRP
VDIVGTLCNLEGMTAADIGVITILDVSTFVEILNNKGSQVLKELQTRNIKGRPRKVSLAE
DKPVTMARKKPIRRFY
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
gtgataagtaaaaaatttaaccagtaccaattaagcgatgagctcctaaaagccatcgaa
aaactaaattttgaaaacccgaccaaggttcaggaagccgtgattccgattgctttggag
aaaaaagatattctctgcaaggctcaaaccggcagcggtaaaacggcggccttcgggatt
ccgatctgtgagctgctggactgggaagagaacaaacctcaggccctggtgctgaccccg
acccgggagctggcgctgcaggtccacgaagatatttttaacattggccgcttcaagcgg
gttaaggtgtcagccctttatggaaaatcaccgatccgccggcaggaaaaagagctgaaa
cagaaaacccatgtggtggtgggaaccccaggccgggttatggatcatattgaacggggc
acctttattaccgatgagatccgttttctggtcattgacgaagctgatgagatgctgaat
atgggttttatcgatcaggttgaggaaatcatcaatgagatgcctaaaaatcgggtgacg
atgttgttttcggcgacgctggaaaatgagattcaacggctgtcaaaaaaatacatgaac
gatccccagatcatcgagattgaagccgaggccaaacgaacggatgccattgaacagttt
gtttataaaaccggccatgaagacaaactggatgtgttaaaggatgtgctggtagtggaa
aatcctgacagctgcattattttttgcaatacccaggaaatggtcaatgccatttataat
ctgctgggtaaggataataaggcctgtgaaaagattcacggtggcatggaacaggatgac
cgcaccctggtcatgcaacgttttaaaaagggcgccttccgctatctgattgccaccgat
gtggcggctcgggggattgatgttcatgagatttcgctggtcattaattttgatgtcccc
tgggaaaaggaaacctatgtccatcgcatcggccggaccggccgtcggggcaccactggt
aaagccattaccctggtttcggccaaagaaggccgcttgttccgggatattgaaaattat
accgacaaagaaataattgaaaaagaatgtcccacgctttccacggtccattcactaaaa
gcggcctttatcgaaaaactacaggaaaaaccggaagaaaagttggacaaagcccatgac
ttgacccgggagatcaccaagatccatatcaatgccggcaaaaagaccaaaatgcgaccg
gtggatattgtcgggacgctgtgtaatctggaggggatgaccgccgcggatatcggcgtg
atcacgattctggacgtctccacctttgtcgaaatcctcaataacaaaggctcccaggtg
ttaaaagagctgcaaacccggaatattaaaggacggccgagaaaggtaagcctggctgaa
gataagccagttaccatggcccgaaaaaaaccgattcgtcgattttattga
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