Acetobacterium malicum subsp. dehalogenans: ACIUZZ_10080
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Entry
ACIUZZ_10080 CDS
T11223
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
amaj Acetobacterium malicum subsp. dehalogenans
Pathway
amaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACIUZZ_10080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaj03019
]
ACIUZZ_10080
Enzymes [BR:
amaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACIUZZ_10080
Messenger RNA biogenesis [BR:
amaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACIUZZ_10080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
XOB56721
LinkDB
All DBs
Position
complement(2179238..2180542)
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AA seq
434 aa
AA seq
DB search
MQFENLNIIQPIQKALTAEGYTEATPIQEKAIPSLLEGRDLLGCAQTGTGKTAAFAIPIL
QKLSYEQRNLKGNRPIKALILAPTRELALQISDSFKAYGKFLGLRTLVIYGGVSQNPQTK
ALGAGVDILVATPGRLLDLINQKYIKLGQIKSFVLDEADMMLDMGMLQDVRKIIKHMPAE
RQNMLFSATMPPEIAKLSGSILRDPVKVTITPVSSTVEVIEQNVYYVNKNNKINLLVHLL
KNREIVSALVFSRTKHGADKIVKHLERSGFKAQAIHGNKSQNARQLALNNFKERKTRILV
ATDIAARGIDIEELSHVFNYDLPEVPETYVHRIGRTGRAGMGGIAIAFCDQEEMPLLEGI
EKLVLKSIPVVEVHPFPLVEVPAELKVASTRRSAAYKATAPKNRRGAGSGSGKSTGGKKD
RDRFYSKNKKKDNV
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatttgaaaatttaaatattatacagccgattcagaaggctttaaccgctgaagga
tatactgaggctaccccgattcaggaaaaggcaattccgtctttgctggaaggccgggat
ttattgggctgtgcccagaccggaacgggaaaaaccgccgcttttgcgatcccgatttta
cagaagctctcttacgaacaacgaaaccttaagggtaatcgtccgatcaaggcgttgatc
ctggcaccgacccgggagctggctttgcagatcagtgattcgtttaaagcctacggcaaa
tttttagggctgcggaccctggttatttatgggggcgtatcacaaaaccctcagaccaag
gccctgggtgctggtgttgatattctggtggcaactccaggacgactgctggatttaatc
aatcagaaatatatcaaactgggtcagatcaagtcgtttgttctggatgaggcggatatg
atgctggatatggggatgcttcaggatgtccgcaaaatcatcaagcatatgccggccgag
cgtcagaatatgctgttctcggctaccatgccgccagaaattgctaaactgtccggttcc
attttacgcgatccggtcaaggtcaccatcacaccggtttcatcaaccgttgaagtgatt
gagcagaacgtttattatgtcaataaaaataataagatcaatctgctggttcatttactg
aaaaaccgggaaatcgtttcggcgctggttttttcccgaaccaagcatggggctgataag
attgttaaacatctggaacgttccggcttcaaggctcaggccattcatggcaacaaatct
cagaatgcccgacaattggccctgaataactttaaagaacgcaaaacccggatcctggtg
gcaacggatatcgccgcccggggcatcgatattgaagaactgtcccatgtttttaattac
gatctaccagaggttccagaaacctatgtccatcggattggccggactggccgggctggt
atgggcggaattgccatagctttttgcgatcaggaagaaatgccgttactggaagggatc
gaaaaactggtattgaaatcaattcccgtggttgaggttcatccctttcccctcgtcgaa
gtaccggcggaactaaaggtcgcttcgacccggcgatcggcggcatataaggcaacagca
ccgaaaaaccgtagaggagctgggagtggcagcgggaaaagtactggtggcaaaaaagat
cgggatcgtttttattctaaaaataagaaaaaagataatgtgtaa
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