Acetobacterium malicum subsp. dehalogenans: ACIUZZ_16020
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Entry
ACIUZZ_16020 CDS
T11223
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amaj Acetobacterium malicum subsp. dehalogenans
Pathway
amaj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amaj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACIUZZ_16020 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amaj03021
]
ACIUZZ_16020 (rpoC)
03400 DNA repair and recombination proteins [BR:
amaj03400
]
ACIUZZ_16020 (rpoC)
Enzymes [BR:
amaj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACIUZZ_16020 (rpoC)
Transcription machinery [BR:
amaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACIUZZ_16020 (rpoC)
DNA repair and recombination proteins [BR:
amaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACIUZZ_16020 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XOB60320
LinkDB
All DBs
Position
complement(3429526..3433197)
Genome browser
AA seq
1223 aa
AA seq
DB search
MNEEFTFKSLQIGLASPEKIREWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPQKDWEC
NCGKYKRIRHKGIVCENCGVEVTKAKVRRERMGHIELASPVSHIWYFKGIPSRMGLILEM
SPRNLEKIIYFAAYVVTDPGESNFDFKQILTEAEYKEAKSQFGNKFTASIGAEAIQELLK
LVDLDQESAVLKEELKGASGQKKIRVARRLEAVEAFRNSTNRPEWMILETIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLLKLLELDAPDIIVQNEKRMLQEAVDALIDNGR
RGRAVTGPGNRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMFQCGLPKE
MAIELFKPFVMRELVGRNLSQNIKSAKKMVEKLDPMVWDVLEDVIQEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLASNNIL
KPQDGTPVVAPTQDMILGTYYMTIYKKDGKGTNSVFRDLDEMEMAYFNKDVELHAQVKVR
ITKEIDGETMTRLVDGTVGRFIFNTIIPQELGFVKRDTIEEKFALEIDRQVNKKVLSEIV
ERCYKTYGPTKTSEVLDEIKRLGFKFSTRGAITVGVSDMEVPKNKEEILSRADDKITENM
TLYRQGFISDEERYNNVVEIWNKATDEVTDALLDHLEDLNPINMMADSGARGSKNQIRQL
AGMRGLMANPSGRIIELPIRSNFREGLNVLEFFSSTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVREDDCGTTRGYEVSTINDHGEIIETLHERLVGRYAFEDVVHPETGEVLAPA
GEIISTEMADSIDKAGIEKVLIRAAFNCQSKYGVCKKCYGVDLTTWRPVEIGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVASADDITQGLPRIEELFEARKPKGQAIISEIDGRVEIQDT
QKKTEAVVTGADGDMKVYLIPYGSRLRVHTGDQVIAGDEITEGSINPSDILRIQGIDHVQ
QYLLQEVQKVYRMQGVHIGDKHLEVIIRQMLRKVKIENPGDTALLAGSLVDIFNFEEENR
AAREAGGEEATASRELLGITKASLATDSFLSAASFQETTRVLTDAAIKGKVDPLIGLKEN
VIIGQLVPAGTGVKMYGDIDLVYEREEEDIYEDMIEEDSVTESLDIVFDDDILNAYVEEE
QDETEDAIITDLDIFDLDFLTKE
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgaggaattcaccttcaaatccttacaaatcggattggcctcacctgaaaaaatc
agagagtggtcacgtggagaagtaaaaaaaccggaaaccattaattatagaaccctgaaa
ccagaaaaagaggggttgttttgtgagaagatttttggaccgcagaaagactgggaatgt
aactgtggtaaatacaagcgtattcgccataaaggcattgtctgtgaaaactgcggggtt
gaagtaactaaggctaaggtcagacgtgagcggatggggcatattgaactggcctctcca
gtttcgcatatctggtatttcaaaggaattcccagtcgaatgggactgattctggaaatg
tctcccagaaatctggaaaaaattatatattttgcggcttatgtggtcaccgatccgggc
gaaagcaattttgatttcaaacagatcctcaccgaagcggagtataaagaagctaagagt
cagtttggcaataagtttaccgccagcattggtgccgaagcgattcaggaattactgaaa
ctggtcgacctggatcaggaatcggctgtgcttaaggaagaactaaaaggcgcgtccggt
cagaaaaagatccgggtcgcccgtcgtctggaagcggttgaagccttcagaaattccacc
aaccgtccggaatggatgattctggaaaccattccggttattccgccggaattgcggcca
atggtccaattggatggcggccgttttgccacctcggatcttaatgacctgtaccgtcga
gtgattaaccgaaacaaccggctgttaaaactgctggaactggatgctccggatatcatt
gttcaaaatgaaaaacggatgcttcaggaagccgttgatgctctaattgacaatggtcga
cgtggccgggccgtcactggtccgggtaaccgtccctttaaatcccttagtgatatgctt
aagggtaaacagggtcgtttccgtcagaaccttttggggaaacgggttgactactcgggc
cgttcggttatcgtcgtcgggccagatctgaaaatgttccaatgtggactccccaaagag
atggcaattgaattattcaagccatttgtaatgcgggaactggttggccgtaacctgtca
caaaacatcaaaagtgccaagaaaatggtcgaaaaactggatccaatggtctgggatgtt
ttagaagatgttattcaggaacatccggttctgttaaaccgggcgccaacccttcatcgc
ctggggattcaggcctttgaaccaattctggttgaaggaaaagcgattaaactccatccg
ttggtttgtactgcctacaatgccgactttgacggcgatcagatggcggtccatgtgccc
ttatcagtcgaagctcaggccgaagcccgcttcctgatgctggcatccaataatattctt
aagccacaggatggtacgccagttgtcgcaccaacccaggatatgattttgggtacctat
tatatgaccatctataagaaagatggcaaaggcaccaatagtgtcttccgagacctggat
gaaatggaaatggcttacttcaataaagatgtcgagcttcatgcccaggtcaaggtccgg
atcaccaaagaaattgatggcgaaacgatgacccgccttgttgatggaaccgtcggtcga
ttcattttcaacaccattattccccaggaacttggttttgttaaacgcgataccatcgaa
gaaaaatttgccctggaaatagaccgacaggttaataaaaaagtattgtcggaaattgtc
gagcgctgctataaaacatatggacccaccaaaacatctgaagtactggatgaaattaaa
cgcttaggttttaaattctcaacccgaggtgccatcaccgttggggtcagcgatatggaa
gttcctaagaacaaagaagaaattctatcccgggccgacgataagatcaccgaaaatatg
accctctatcgtcaaggttttatcagtgatgaagaacgttataataatgttgttgaaatt
tggaacaaagctactgacgaagttaccgatgcgttgctggatcaccttgaagatctgaat
ccaattaacatgatggcggattccggggcccgaggtagtaagaaccagatccgacagtta
gccgggatgcgtggtctgatggccaacccaagtggtcgaatcatcgagctgccaatccgg
tccaacttccgtgaagggttaaatgttctggagtttttctcctccacccatggggcccga
aaaggtctcgcggataccgccctacgaactgccgattccggttacctgacccggcgtctg
gttgatgtcagccaggatgtaattgtccgtgaggatgattgcggcaccacccggggttat
gaggtttccacaattaacgatcacggcgaaattatcgaaaccctgcatgaacgattggtc
ggccgatatgcctttgaagatgtagttcatccggaaacaggcgaagtcctggcaccggcg
ggcgagatcatctcaactgaaatggctgacagtattgataaagcggggattgaaaaagta
ttgattcgcgccgcctttaattgtcagtccaaatatggggtctgtaaaaaatgctatggg
gttgatttaaccacctggcgacccgttgaaatcggcgaagccgttggtatcattgccgcc
cagtcaattggtgagccgggtacccagctgaccatgcgtaccttccatactggtggggtt
gcttcagctgatgatatcacccagggtctgccccgtatcgaagagcttttcgaagcccga
aaaccgaaaggccaggcgattatttcagaaattgacggtcgcgtggaaattcaggatacg
cagaagaaaactgaagccgttgttaccggtgctgatggggatatgaaggtttacctgatt
ccttacggctcacgactgcgggttcataccggcgatcaggtcattgccggagatgagatc
accgaaggttccattaaccccagtgatattcttcgtattcaggggattgaccatgtgcag
caatatctgctgcaggaagtgcaaaaagtttaccgaatgcaaggggtacacatcggcgac
aagcatctggaagttattatccgtcaaatgcttagaaaagttaagattgaaaaccctggc
gatactgctttactggcgggcagcttagttgatatcttcaattttgaagaagaaaaccgt
gccgcccgggaagccggtggcgaagaagcgacagccagccgggaactactgggtatcacc
aaagcttcgctggcaactgattcattcctatcagccgcatccttccaggaaaccactcgg
gtcctgaccgacgccgccattaaaggcaaggtcgatccgttgattggactgaaagaaaat
gttattatcggacaattggtgccagccggtaccggtgtcaagatgtatggtgacattgat
ctggtttatgaacgggaagaggaagatatttacgaggatatgatcgaagaagactcggtt
actgaatcactggatatagttttcgatgatgatattttaaacgcctatgttgaagaagaa
caggatgaaacggaagatgccattatcaccgatctggacatcttcgacctggatttctta
acaaaagaataa
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