Akkermansia massiliensis: J5W79_00075
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Entry
J5W79_00075 CDS
T09439
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
amak
Akkermansia massiliensis
Pathway
amak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5W79_00075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amak03019
]
J5W79_00075
Enzymes [BR:
amak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5W79_00075
Messenger RNA biogenesis [BR:
amak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5W79_00075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
NACHT
Motif
Other DBs
NCBI-ProteinID:
QWP73297
LinkDB
All DBs
Position
18989..20278
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AA seq
429 aa
AA seq
DB search
MVSTTFRELGLSAPILRQLEKLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFAL
PLIQQFSEHPRKPLARQVRALILSPTRELAAQIHDNICAYAKGLNLSTAVIFGGVGYAPQ
FKKLAGGLDILVATPGRLIDHLERQTVNLGGVETLILDEADHMLDMGFAPALKKIVAKIP
KKRHTQMFSATMPDNILQLAQSLLQEPETVMVTPPAATADRVEQSLCMVGSQAEKRPLTL
DLLEQQEQPGRTLIFTRTKHGANRLASFLTGKDHPASAIHGDKSQGTRERMLREFRSGET
PILVATDIAARGIDVKDVQLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPDEIKK
ARDVHKLLGRLLPVHSSSATIPSELQTVPGTHRERKNSMQENRSASRRGPRKSYGRRNSA
GRQGSRAGA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggtatcaaccacattcagggagcttggcttgtcggctcccattctccgccagctggag
aaactggagtacaagacccccacccccatccaggcagcctgcatccccctgctgctgcag
aacaaggacctgatgggactggcgcagaccggaaccggcaaaacggccgcgttcgccctg
cccctcattcaacaattttcagaacatcccagaaagccgcttgcccgccaggtcagggcg
ctcatcctgagccccacccgggaactggccgcgcagattcatgacaacatctgcgcctat
gccaaagggctgaacctgtccaccgccgtcatcttcggcggcgtggggtacgccccccag
ttcaagaagctggccggcggcctggatattctggtagccacgcccggcaggctgattgac
catctggaacgccagaccgtcaacctgggcggtgtggaaaccctgattctggacgaagcg
gaccacatgctggacatgggcttcgctccggccctgaaaaagatcgtcgccaaaatcccg
aagaaacgccatacccagatgttctccgccaccatgccggacaacattctgcaactggcc
cagtccctgcttcaggaaccggaaacggtgatggtcacccccccggccgccacggcggac
agggtggaacagtccctctgcatggttggctcccaggcggaaaaaaggccccttaccctg
gatctgctggaacagcaggaacagccgggccgcacgctcatcttcacccggaccaagcac
ggcgcgaaccgcctggcctccttcctgaccggaaaggaccacccggcctccgccatccac
ggcgacaagagccagggcacgcgtgaacgcatgctccgggaattccgttccggggaaacg
cccattctcgtcgccacggacatcgccgcccgcggcattgacgtgaaagacgtgcagctc
gtcatcaactacgatctgccggaagaaccggaagtctatgtgcaccgcatcggccgcacg
gcacgcgccggagccgccgggcaagccatcgccctctgttccccggatgaaatcaaaaaa
gccagggacgtgcacaagctgctggggcgcctccttcccgtccattcctccagcgctacc
ataccgtctgaattgcagacggttcccggcacgcaccgggaaaggaaaaactccatgcag
gaaaaccgttccgcctcccgcagggggccgcggaaaagttacggaaggcggaattccgcc
ggaaggcagggaagccgtgcgggcgcatga
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