Akkermansia massiliensis: J5W79_02760
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Entry
J5W79_02760 CDS
T09439
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amak
Akkermansia massiliensis
Pathway
amak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5W79_02760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amak03019
]
J5W79_02760
03009 Ribosome biogenesis [BR:
amak03009
]
J5W79_02760
Enzymes [BR:
amak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5W79_02760
Messenger RNA biogenesis [BR:
amak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5W79_02760
Ribosome biogenesis [BR:
amak03009
]
Prokaryotic type
rRNA helicases
J5W79_02760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QWP73800
LinkDB
All DBs
Position
complement(654589..656403)
Genome browser
AA seq
604 aa
AA seq
DB search
MTQTSSFSTLGISPEILEAIEVLGFDTPSAIQEQAIPAAIGGSDIVGLSHTGSGKTLAFA
IPALECIDPEERNVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDA
LRRGVQFVVGTPGRVMDLMESGALKLDNLRMLILDEADEMLDMGFLEDIERIAEFMPETK
QTLFFSATMSPEINRLVNRFMKDPVQITIERPTLTVPTIEQSYYEVVFSSRIEVLSRLLD
TGKIKMGLVFANTKKVVDDIVDGLTARGYPVDRLHGDMPQIMRERVMDSFRKGSLRLLVA
TDIAARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFMGRRDFSLMSRIE
RFIGVKLTPEPVLTAVQVDQLRTESLVDDILERLKPDAVLPEELKEVEAAPEAMAAALFD
LLRERTHREVQPIPEDKPARRTRHVSQPGEEAESPQKGDSWQHKGDTVTLFMNGGKMIGL
RPKDIAGLFYNTVEMEKGAVGDIRIFPKHSLIEVDASVAPQLLDALATATVCGYEVNVRE
DKGTPEYSDGPRPPRRSGGFRGGYRGDRDRSDRGGFRGNRGGFRSDRGERWGDRPRRDDR
KKRF
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaacatcttctttttcgacgcttggcatttcgccggagattctggaagccatt
gaagtgctcggcttcgatactccttccgccattcaggagcaggcgattcccgctgcgatc
ggagggtccgatatcgtggggctgtcccatacgggttccggaaagacgcttgcctttgcc
attccggccctggagtgcattgatcccgaggagcggaatgtccaggtgctggccctttgc
cccacgcgggaactggccgtccagatttgccgggaggtggacaagctggccctgttcatg
gacggcgtttccgccgttcccatttatggcggttcctccttccgcccgcaattggacgcc
ctgcggcgcggggtccagttcgtggtgggaacgcccggccgcgtcatggacctgatggag
tccggtgcgctgaagctggacaatctccgcatgctgattctggatgaagcggacgagatg
ctggacatgggctttttggaagatattgaacgtattgcggagttcatgccggaaacgaag
cagaccctgtttttctccgccaccatgtctccggaaatcaaccggctggtgaaccggttc
atgaaggaccccgtccagatcaccattgagcggcccacgctgacggtgcccaccattgaa
cagtcttattatgaggtggtgttttcttcccggattgaggtgctcagccgcctgctggac
acagggaagatcaagatgggcctggtttttgccaataccaagaaagtggtggacgacatc
gtggacggcctgacggcccggggttatcccgtggaccgcctccacggggacatgccccag
atcatgcgggagcgcgtgatggattccttccgcaaggggagcctgcgtctgctggtggct
acggatattgccgcccgcggcctggatgtggacgatgtggatgccgtggtgaattttgaa
ctgccgcgtgatccggaggattacgtgcaccgcatcggccgcacggcgcgcgccgggcgc
aaggggaaggccatcacttttatggggcgccgtgatttttccctgatgagccgcattgaa
cgcttcatcggcgtcaagctgactccggaacccgtgctgaccgccgttcaggtggaccag
ctccggacggaatccctggtggatgacattctggaacgcctcaagccggatgccgttctg
ccggaggaattgaaggaagtggaagccgctccggaagccatggccgccgccctgtttgat
ttgctccgggagcgcacgcaccgggaagtacagcccattccggaggacaagcccgcccgc
aggacgcgccatgtatcccagcccggagaagaggcggagagcccgcaaaagggagattcc
tggcagcacaagggggatacggtcacgctgttcatgaacggcggcaagatgatcggcctg
cggcccaaggacatcgccggattgttttacaatacggtggaaatggagaagggcgccgtg
ggcgatatccggattttccccaagcattccctgattgaggtggacgcttccgtagctccc
cagctcctggacgccctggctacggccaccgtctgcgggtatgaggtcaacgtccgcgag
gacaagggcacgccggaatattccgacgggccgcgtccgccccgccgcagcggaggtttc
cgcggcggctaccgcggagaccgggaccggagcgaccgcggcggattcaggggaaaccgc
ggaggcttccgcagtgaccgtggtgaacgctggggcgaccgcccccgcagggacgacagg
aagaagcggttctga
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