Akkermansia massiliensis: J5W79_05060
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Entry
J5W79_05060 CDS
T09439
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
amak
Akkermansia massiliensis
Pathway
amak03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
J5W79_05060 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amak03400
]
J5W79_05060 (xth)
Enzymes [BR:
amak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
J5W79_05060 (xth)
DNA repair and recombination proteins [BR:
amak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
J5W79_05060 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
QWP74233
LinkDB
All DBs
Position
complement(1188496..1189257)
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AA seq
253 aa
AA seq
DB search
MKLVSWNVNGLRAILGKGMGDAVEALEPDVLCLQEIKARPEQVNDLWISSWPHQLWNPAE
KAGYSGVLILSRVQPLSTSTGIGWPEHDREGRVCTMEFEQFYLVNCYTPNSQNELVRLPY
REQWDAAFRKYVAALAETKPVVFCGDLNVAHEEIDIARPRENRFSAGFSDQERAGFTLLL
EAGFTDTFRALHPEEPGWYSWWSYRAGARARNVGWRIDYFCVSNPLAPRVKGAAIHPDVT
GSDHCPVSLEIDC
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcgtctcatggaatgtgaacggattgcgggcgatcctcggcaagggaatgggg
gacgccgtggaggcgctggagccggacgtcctctgccttcaggagatcaaggcgcgtcca
gaacaggtgaatgacctgtggatttcctcctggccgcaccagctctggaatccggcggag
aaggccggttattccggcgtgctgatcctcagccgtgtgcagcccctttccacgtccacc
ggaatcggctggccggagcatgaccgggaggggcgcgtgtgcacgatggagtttgaacag
ttttacctggtcaactgctatacccccaattcccagaacgagctggtgcgcctcccgtac
cgggaacagtgggatgctgcgttccgcaagtatgtggcggccttggcggaaaccaagccg
gtcgtcttctgcggggatttgaatgtagcccatgaggagatcgacatcgcccgccccagg
gagaaccgtttttccgccgggttcagcgaccaggagcgcgccgggttcacgctgctgctt
gaggccgggttcacggataccttccgcgccctgcatccggaggaaccgggctggtacagc
tggtggtcctaccgcgcaggcgcccgcgcccggaacgtcggatggcgcattgactacttc
tgcgtttccaatccgctggctcccagggtgaagggcgccgccatccatccggacgtgacg
gggtccgaccattgtcccgtcagcctggaaattgactgctga
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