Akkermansia massiliensis: J5W79_05685
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Entry
J5W79_05685 CDS
T09439
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
amak
Akkermansia massiliensis
Brite
KEGG Orthology (KO) [BR:
amak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amak03019
]
J5W79_05685
Messenger RNA biogenesis [BR:
amak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J5W79_05685
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
TraI_2
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
QWP74351
LinkDB
All DBs
Position
complement(1344484..1345539)
Genome browser
AA seq
351 aa
AA seq
DB search
MEQVSLMELGKLAAEGQVEAEVFAQIAQCAQKMTKSNKPYLDVSFADAEGTMGLKVWEDK
PWFRTLASLPLRSFVSLRGQWTKGGFGMEAADLEVRPLDEQEKESFLAGSGTLKKKQEAD
LKEICVLIKGMNDPRIRALCIEFIEQFGERLQRAAAARTYHHARRGGLVEHVAGMMRTAS
AVCQANPELNRDLLLAGCLFHDCGKLWENCYPKEDFTMPYSEAGELLGHIPLGIELVNNL
WKRIMALPEAESWKTLDPASPDVRMHLLHLIASHHGELAFGSPVFPKTPEAVALHYIDNL
DAKLEMFRGAYETSEALAPKVLQRKAPLPANVVLPLPSVLPLERDGADAMQ
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagtcagtctcatggagttgggcaagctggccgcggagggccaggtggaagcg
gaagtttttgcccagatcgcccagtgcgcgcagaagatgaccaagagcaacaagccgtat
ctggacgtatcttttgccgatgcggaagggacgatgggactgaaggtgtgggaggacaag
ccctggttccgcacgctggcctccctgcctctccgcagtttcgtgagcctgcgcggccag
tggaccaaggggggcttcggcatggaagcggccgatctggaagtgcgccccctggacgaa
caggagaaggaaagcttcctggccgggtccggaaccttgaagaagaagcaggaggcggac
ctgaaggagatttgcgtgctcatcaagggcatgaatgatccgcgcattcgcgccctgtgc
attgaattcatcgaacagttcggggaacgcctccagcgcgccgccgccgcccgcacttac
catcacgcccgccgcggcggactggtggagcatgtggcgggaatgatgcgcacggcctct
gccgtctgccaggcgaatccggagctgaaccgcgatctcctgctggccggatgcctgttt
cacgactgcgggaagctgtgggaaaactgctacccgaaggaggatttcacgatgccctat
tcggaagccggggaactgctgggccacattccgctgggcattgaactggtcaacaatctg
tggaagcgcatcatggcccttccggaagcggaatcctggaagacgctggaccccgcctcc
ccggacgtgcgcatgcacctgctgcacctgatcgcctcccaccacggggaactggccttc
ggctcccccgtgttccccaagaccccggaggcggtggccctgcattacattgacaatctg
gacgccaagctggagatgttccgcggcgcctatgagacgagcgaggcgctggcccccaag
gtgctccagcgcaaggcccccctgcctgccaacgtcgttcttccgctgccttccgttctt
cccctggaacgggacggcgcggacgccatgcagtaa
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