Akkermansia massiliensis: J5W79_07755
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Entry
J5W79_07755 CDS
T09439
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
amak
Akkermansia massiliensis
Pathway
amak03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
J5W79_07755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amak03000
]
J5W79_07755
03400 DNA repair and recombination proteins [BR:
amak03400
]
J5W79_07755
Enzymes [BR:
amak01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
J5W79_07755
Transcription factors [BR:
amak03000
]
Prokaryotic type
Helix-turn-helix
AraC family
J5W79_07755
DNA repair and recombination proteins [BR:
amak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
J5W79_07755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
QWP72260
LinkDB
All DBs
Position
1856172..1857644
Genome browser
AA seq
490 aa
AA seq
DB search
MKGNEKAWYAAFKSKDARFDGHFFVGVASTGIYCRPICRAKLPRAGNCTYYATAAEAERA
GFRPCLQCRPELAPGTAPVDAAASLARRAAGFLEENCGDMESLEELAAHLGCTGRHLRRA
FAAEFNVSPIQYLQTLRLLLAKNLLTSTRLSVLDVAMSAGFGSLRRFNELFKKEYRLSPA
ALRKLGKGGKEEEGSGITLTLPYRPPCRWERLLEFLALRAIPGVEAVRGGEYGRTVRLAT
RRGKDVYGWIRVGHCPVKNALIVVIARSLLPALSQVLARVRHLFDLYCDPAAVDETLAVM
NGLTLGLYVPGTRLPGCFDPYELAVRTALGRQISMKAANALAGRLARSHGEPVRTGMEGL
THAFPAPGKILSLSGPESAGWDIPGMTASRGRAVVELARAFEEGSIDFSFRADPEAEMKK
LAGLPGIGTWTAQYIAMRAFGWTDAFPSTDPGIREALSPRTQKEILALAEGWRPWRGYAA
VNLWNSLKQH
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggaaatgaaaaggcctggtatgccgcgtttaaatccaaggatgcccgttttgac
ggccatttcttcgtgggggtagcgtctacgggcatttactgccgccccatatgccgcgca
aagctgcccagggccgggaattgcacctattacgccacagcggctgaagcggaacgggcc
ggattccggccttgcctgcaatgccgcccggagcttgcgcccggaaccgccccggtggac
gccgccgcttccctggcgcgccgtgcggccggtttcctggaggagaattgcggagacatg
gaaagcctggaagagcttgccgcccacctgggctgcaccgggcggcatttgcgccgggct
tttgccgcggagttcaatgtttcccccatccagtacttgcagactctccggctgctgctg
gcgaagaatctcctgacaagcacgaggctttctgttcttgacgttgccatgagcgcgggg
ttcggcagtttgcggcgcttcaatgaattgttcaaaaaggaatacaggctttccccggcg
gcattgcggaagctggggaaggggggaaaagaggaggagggttccggaataacgctgacg
ctgccttaccgtcctccctgccggtgggagaggctgcttgagttcctcgcgctgcgggcc
attcccggcgtggaggccgtacgcggcggggagtatggccgcaccgtgcgccttgcaacc
agaagggggaaagatgtctatggctggatacgggtgggccattgccccgtgaaaaatgcg
ctgatcgtggtgatcgcgaggtctctgcttcccgccttgtcccaggttcttgcaagggtg
cggcatttgtttgacttgtactgtgacccggccgcggtggatgaaacgctggctgtcatg
aacggcctgactctggggctatatgttccgggaacccgtttgcccggctgttttgaccct
tacgagctggcggtgcggacagcgctgggaaggcaaatttccatgaaagccgcgaatgct
ctggcggggaggcttgcgcggagccatggcgagcccgtgcggacggggatggaggggctg
acccatgcgtttcctgcgccggggaagattctttccctgagtggcccggaaagcgctgga
tgggacattcccggaatgaccgcgtccaggggcagggcggttgtcgagctggcgcgcgcg
tttgaagaagggagcattgatttcagtttccgggccgatcctgaggctgaaatgaaaaag
ctggcggggctccccggcatcggaacatggacggcgcaatatatcgccatgcgggccttt
ggatggacggatgcctttccttcaaccgatcccggcattagagaggcgctctccccgcgc
acgcaaaaggaaattcttgctctggcggaaggctggaggccgtggcgcggctatgctgcc
gtcaatttatggaattcactgaaacaacactga
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